Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02978 ATGGCGCAACAAGAAGACTCCCTGTTTGGTCTTCTTGCCTTTGATGAATTTTACTTATCAACTCTGTTTGACAACGATGAAGAAGATGAAGATGGAATTATCACCGTGTCTGATGATAAGTATGCTCAAGAGTTGCAGTTTCAGGAGACCATCATGGCCTCTATTGTTACTTACCAAAACGCGTTGTCGTCCAAGACGGAGCTGATAGAGTTGGTGACTGGAGAAGAAGCAGGGGAATCCTCATTCATCATCTGCGAGATTTGTGCAGAAGCAAGAGGGAGGGATGAGATGTTCAGGAACAAGAGATGTGACCATTCATTCTGCTCTGACTGTATCACCAAACAAGTGGCCACAAAGATACAAGACGGCAAAACAGTTGTTCCTTGTCTTGGATTGAACTGCAAGGGTGTGTTGGAGCTTGATGCTTGCAGGTCAATGCTCCCAAAAGACCTGATTGACAGGTGGGATGATGCACTGTGTGAGGCTCTTTTGCTTACAGCTCAGAAATTATATTGCCCCTTTAGGGACTGCTCTGCTATGTTGCTGTATGACAATGAAGGGGGGGAAGAAGAAATGAGGGAGTCTGAGTGCCTTTATTGCCATAGACTCTTTTGTGCAAGGTGTCATGTTCCTTGGCATTCTGGGGTTACCTGTGAAGATTTCCAGACACTCGATGAGGATGAGAGAGGGAGGGAAGATCTCCTTGTTAGAAAACTTGCTATTGATAAGAAATGGAGTAGGTGTCCCAAATGCAAGTTCCTTGTCGAAAAGACTGAAGGGTGTTTGCATATGACCTGCAGGTGCCAATTTCAGTTTTGCTATGCTTGTGGAGAACAATGGACTTCTACCCATGGTGGCTGCCAAACAAATTAG 873 0.449 MAQQEDSLFGLLAFDEFYLSTLFDNDEEDEDGIITVSDDKYAQELQFQETIMASIVTYQNALSSKTELIELVTGEEAGESSFIICEICAEARGRDEMFRNKRCDHSFCSDCITKQVATKIQDGKTVVPCLGLNCKGVLELDACRSMLPKDLIDRWDDALCEALLLTAQKLYCPFRDCSAMLLYDNEGGEEEMRESECLYCHRLFCARCHVPWHSGVTCEDFQTLDEDERGREDLLVRKLAIDKKWSRCPKCKFLVEKTEGCLHMTCRCQFQFCYACGEQWTSTHGGCQTN* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02978 290 Gene3D - 220 290 - -
Rops6g02978 290 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 58 280 IPR031127 GO:0004842|GO:0016567
Rops6g02978 290 CDD BRcat_RBR_unk 167 221 - -
Rops6g02978 290 FunFam RBR-type E3 ubiquitin transferase 80 166 - -
Rops6g02978 290 Pfam IBR domain, a half RING-finger domain 165 218 IPR002867 GO:0008270
Rops6g02978 290 Pfam IBR domain, a half RING-finger domain 237 287 IPR002867 GO:0008270
Rops6g02978 290 SUPERFAMILY RING/U-box 229 288 - -
Rops6g02978 290 FunFam RBR-type E3 ubiquitin transferase 220 290 - -
Rops6g02978 290 SUPERFAMILY RING/U-box 79 162 - -
Rops6g02978 290 SUPERFAMILY RING/U-box 156 222 - -
Rops6g02978 290 CDD Rcat_RBR_unk 244 280 - -
Rops6g02978 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 164 IPR013083 -
Rops6g02978 290 ProSiteProfiles TRIAD supradomain profile. 81 290 IPR044066 -
Rops6g02978 290 ProSitePatterns Zinc finger RING-type signature. 103 112 IPR017907 -
Rops6g02978 290 Gene3D - 170 219 - -
Rops6g02978 290 SMART ibrneu5 153 218 IPR002867 GO:0008270
Rops6g02978 290 SMART ibrneu5 228 287 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02978 Rops-Chr6 52761342 52762381 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02978 48 277 C3H Transcription Factor Family AT2G19610 27.083 1.50e-23 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02978 K11975 - qsu:112001859 361.303