Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02977 ATGGCGCAACGAGAAATCTCACCCTTTGCTCTTCGGTGGTTGCAGTTCCAGGAAGACCCCAAGGCCTCTGTCATCACTTCCCAAAAAGCGGCGTCGTCTTCTTCATCATCAATAACAACACCACCACCACCATCACGCTTCCTTTGCTCAGCATCTTCATTAAAAACTGTTGAAGTTAGCCTTCCCCCCATGAAGAAGAAGAGGAAGGTAGAAGAAGCAGGCAATCAAAGCTCAAAAACACGACCACCACGACCATCACCTTTTCCCTGCTTAGCATCTTCATCAAAAACCGTTAAAGTTAGCCTTCCCCCCAAAAAGAAGAGGAAGGTAGGGTTGACCACTGTAAAAAAAGCAGGTGAATCCTCATTCATCATATGCGAAATCTGTGCAGAAACGAAAAGGAGGGATAAGATGTTCAGGAACAAGAGATGTGACCATTCCTTCTGCTCTGACTGTATCACCAAACAAGTGGCCACAAAGATACAAGACGGCATAACAGTTGTTCCTTGTCTTGGTTTGAACTGCAAGGGTGTGTTGGAGCTTGATGCTTGCAGGTCAATGCTCCCAAAAGAAGTAATTGAAAGGTGGGATGATGCAATGTGTGAGGCTTTTTTACTAACTGCTAAGAAATTCTATTGCCCCTTTAAGGATTGTTCTGCTATGATGCTGGATGACAATGAAGAAGGGAGACATATTAGGGAATCTGAGTGCCCATTTTGCCATAGACTTTTCTGTGCAAGGTGTCATGTTCCTTGGCATCATGGGATTGGCTGTAAGGAGTTCCAGAAACTCAATGAGAATGAGGGAGGGAGGGAGGATCTCCTTGTTAGAGAACTTGCTAATGAGAAGAAATGGAGCAGGTGTCCCAAATGCAAGTTCTATGTTGAAAAGACTGGAGGGTGTTTGCATATCACATGCAGGTGCAAATTTCAGTTTTGTTATGCTTGTGGAAAAGAATGGAGCTTAATTCATAGTTGCGGCAAAAGAAATTAG 993 0.4401 MAQREISPFALRWLQFQEDPKASVITSQKAASSSSSSITTPPPPSRFLCSASSLKTVEVSLPPMKKKRKVEEAGNQSSKTRPPRPSPFPCLASSSKTVKVSLPPKKKRKVGLTTVKKAGESSFIICEICAETKRRDKMFRNKRCDHSFCSDCITKQVATKIQDGITVVPCLGLNCKGVLELDACRSMLPKEVIERWDDAMCEAFLLTAKKFYCPFKDCSAMMLDDNEEGRHIRESECPFCHRLFCARCHVPWHHGIGCKEFQKLNENEGGREDLLVRELANEKKWSRCPKCKFYVEKTGGCLHITCRCKFQFCYACGKEWSLIHSCGKRN* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02977 330 MobiDBLite consensus disorder prediction 24 47 - -
Rops6g02977 330 CDD BRcat_RBR_unk 208 261 - -
Rops6g02977 330 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 58 326 IPR031127 GO:0004842|GO:0016567
Rops6g02977 330 MobiDBLite consensus disorder prediction 61 75 - -
Rops6g02977 330 ProSiteProfiles TRIAD supradomain profile. 122 330 IPR044066 -
Rops6g02977 330 Gene3D - 255 330 - -
Rops6g02977 330 FunFam RBR-type E3 ubiquitin transferase 121 207 - -
Rops6g02977 330 SUPERFAMILY RING/U-box 196 263 - -
Rops6g02977 330 SUPERFAMILY RING/U-box 120 203 - -
Rops6g02977 330 ProSitePatterns Zinc finger RING-type signature. 144 153 IPR017907 -
Rops6g02977 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 204 IPR013083 -
Rops6g02977 330 FunFam RBR-type E3 ubiquitin transferase 260 330 - -
Rops6g02977 330 MobiDBLite consensus disorder prediction 61 95 - -
Rops6g02977 330 CDD Rcat_RBR_unk 284 320 - -
Rops6g02977 330 Pfam IBR domain, a half RING-finger domain 277 322 IPR002867 GO:0008270
Rops6g02977 330 Pfam IBR domain, a half RING-finger domain 195 258 IPR002867 GO:0008270
Rops6g02977 330 SMART ibrneu5 272 326 IPR002867 GO:0008270
Rops6g02977 330 SMART ibrneu5 194 258 IPR002867 GO:0008270
Rops6g02977 330 SUPERFAMILY RING/U-box 272 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02977 Rops-Chr6 52757597 52759229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02977 91 317 C3H Transcription Factor Family AT2G19610 29.958 1.76e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02977 K11975 - qsu:112001859 329.717