Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02976 ATGGCCTCTCTCATAACTTCCCAAAACGCGTCGTTGTCTTCTTCATCATCAATAACACCACCACCATCACCCTTCCTTTGCGTAGCATCTTCATCAAAAGCAGTTGAAGTTAGCCTTACCCCCGTGAAGAAGACAAAGGTAGAAGAAGCAGGTGAATCCTTAATCATCATCTGCGAGATTTGTGCAGAAACGAAAAGGAGGGACGAGATGTTCTGGAACAATAGATGCGACCATTCCTTCTGCTGTGACTGTATCACCAAACAAGTGGCCACAAAGATACAAGACGGCATAACCGTTGTTCCTTGTCTTGGTTTGAACTGCAAGGGTGTGTTAGAGCTAGATGCTTGCAGGTCAATTCTCCCAAAAGACCTGATTGGAAGGTGGGATGATGCAATGTGTGAGGCTCTTTTACTTACAGCTCGGAAATTCTACTGCCCCTTTAGGGACTGTTCTGCTATGTTGCTGGATGACATTGACAATGAAAAAGGGGAAGATATTAGGGAGTCTAAGTGCCCTTTTTGCCATAGGCTCTTCTGTGCAAGGTGTCATGTTCCTTGGCATTCTGGGATTACCTGTGAAGAGTTCCAGACACTCGATGAGGATGAGAGAGGGAGAGAAGATCTCCTTGTTAGAGAACTTGCTAATGAGAAGAAATGGAGCAGGTGTCCCAAATGCAAGTTCTTTGTCGAAAAGACCACAGGGTGTTTGCATATGACCTGCAGGTGCCAATTTCAGTTTTGCTATGCTTGTGGAAAACCATGGACTTGTTGTCATGGTGTTTGTCAAATCAAGTTCTCATGA 801 0.4482 MASLITSQNASLSSSSSITPPPSPFLCVASSSKAVEVSLTPVKKTKVEEAGESLIIICEICAETKRRDEMFWNNRCDHSFCCDCITKQVATKIQDGITVVPCLGLNCKGVLELDACRSILPKDLIGRWDDAMCEALLLTARKFYCPFRDCSAMLLDDIDNEKGEDIRESKCPFCHRLFCARCHVPWHSGITCEEFQTLDEDERGREDLLVRELANEKKWSRCPKCKFFVEKTTGCLHMTCRCQFQFCYACGKPWTCCHGVCQIKFS* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02976 266 MobiDBLite consensus disorder prediction 1 20 - -
Rops6g02976 266 FunFam RBR-type E3 ubiquitin transferase 194 265 - -
Rops6g02976 266 Gene3D - 189 264 - -
Rops6g02976 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 136 IPR013083 -
Rops6g02976 266 FunFam RBR-type E3 ubiquitin transferase 55 139 - -
Rops6g02976 266 SUPERFAMILY RING/U-box 130 196 - -
Rops6g02976 266 SUPERFAMILY RING/U-box 56 135 - -
Rops6g02976 266 CDD BRcat_RBR_unk 140 195 - -
Rops6g02976 266 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 22 255 IPR031127 GO:0004842|GO:0016567
Rops6g02976 266 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
Rops6g02976 266 SUPERFAMILY RING/U-box 203 262 - -
Rops6g02976 266 Pfam IBR domain, a half RING-finger domain 132 192 IPR002867 GO:0008270
Rops6g02976 266 Pfam IBR domain, a half RING-finger domain 211 258 IPR002867 GO:0008270
Rops6g02976 266 ProSiteProfiles TRIAD supradomain profile. 54 266 IPR044066 -
Rops6g02976 266 SMART ibrneu5 126 192 IPR002867 GO:0008270
Rops6g02976 266 SMART ibrneu5 202 261 IPR002867 GO:0008270
Rops6g02976 266 CDD Rcat_RBR_unk 218 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02976 Rops-Chr6 52748227 52749139 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02976 51 253 C3H Transcription Factor Family AT2G19610 29.524 3.66e-21 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02976 K11975 - qsu:112001859 327.791