Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02974 ATGTTTCACTCAAACGCACTTGATTCTTCTCAGCAAAACTCAGAGAACGAATTGGAAAGGAACAGAGATGATGAATCTGGGAACGAGATCATGGAAGCTCCTCCTTCCGGTGACGACCAAGATACCGACCAACGACCCAAAAAGAAGCGCTACCATCGCCACACACAGCACCAAATACAAGAGATGGAAGCGTTCTTCAAGGAGTGCCCTCACCCAGATGACAAGCAAAGGAAAGAGCTGAGCCGTGAGCTTGGGCTTGAGCCTTTGCAAATCAAGTTTTGGTTCCAAAACAAACGCACCCAAGTGAAGGCTCAACATGAACGTCATGAGAATACTATTTTGAAGACTGAGAATGAAAAGCTTCGTGCGGAGAATGCAAGGTATAAGGAGGCACTAAGTAATGCTACATGTCCCGGTTGTGGAGGCCCACCTGCTCTTGGTGAAATGTCGTTTGATGAGCAACACTTGAGGATTGAGAATGCTCGTTTAAGAGAAGAGATTGAGAGGATGTCAGGAATGGCAGCCAAATATGTTGGGCACCCTGGGAGTTCCTACTCTAACATGTCATCTCACAGTCACATGCCTTCACGCTCTGTTGATATAGGAGGTGGGAGTAACTATGGATCACAATCAGGCATGGTAGGGGAAATGTATGGTGGTAGTGACCTTCAAAGGTCACTTCCAGTTCCTAATGATTCTGACAAACCCATGATTGTGGAGCTTGCTGTGGCTGCTATGGAGGAACTCACAAGGTTGGCTCTCTCTGGAAACCCTTTGTGGGTCCCAGGTAACCATGGTAATGAGATTCTAAATGAAGATGAATACTTGAGGACTTTCCCTAGGGGAATAGGTCCCAAACCCTTGGGTTGTAGATCTGAATCTTCAAGGGAATCCGTGGTGGTTATCATGAATCACATTAACCTCGTTGAGATCCTTATGGATGTGAATCAATGGTCAACTGTGTTTTGCGGTATTGTTTCAAGAGCAATGACACTTGAAGTCCTGTCAACTGGAGTGGCAGGAAACTACAATGGAGCCTTGCAAGTGATGTCAGCTGAGTTTCAGGTCCCTTCACCACTTGTTCCTACCCGTGACAACTATTTCGTGAGGTACTGTAAGCAGCACCCAGGTGGGTCGTGGGCTGTGGTTGATGTTTCCTTGGATAATCTGCGACCTAGTGCTATCTCTCGAAGCCGAAGACGACCCTCTGGTTGTTTGATTCAAGAATTGCCAAATGGTTACTCGAAGGTTACATGGGTGGAGCATGTAGAAGTAGATGACAGAGCAGTGCATGATCTCTATAAAGCTTTAGTTAATTCTGGCCTTGCCTTTGGAGCAAAACGGTGGGTTGCAGCATTAGATAGACAATGTGAACGTCTTGCTAGTGCAATGGCCACTAACATACCACCAGGGGACCTTTGTGTGATAACTAGTCCTGAGGGAAGGAAAAGTATGCTGAAGCTGGCAGAGAGAATGATAATGAGCTTTTGCACAGGTGTTGGTGCTTCCACAGCACATGCTTGGACAGCACTAACACCAACTGATTGTGATGATGTGAGGGTCATGACTAGGAAGAATACTGATGAACCGGGTAGACCTCCTGGTATAGTTCTCTGTGCTGCAACTTCTTTCTGGCTGCCAGTTCCATCAAAGAGGCTTTTTGATTTTCTTAGAAATGAAAACTCAAGAAGTGAGTGGGATATTCTCTCCAACGGGGGTTTAGTGCAAGAAATGGCGCACATAGCTAATGGTCGTGATCCTGGAAACTGTGTCTCTTTACTTCGAGTCAATGGTGCAAATTCCAGCCAAAGCAACATGCTTATACTTCAAGAGAGTTGCACTGATTCTACAGGATCATACGTGATTTATGCCCCTGTTGATCTTGTTGCCATGAATGTGGTCTTGAGTGGCGGTGATCCTGATTATGTTGCCCTTCTACCCTCTGGTTTTGCTATTCTCCCTGATGGGCCTGCACCAAGTGGAGGACCCATACTTGATGTTGGAGCTGGAGGTTGTCTGTTAACAGTTGCATTTCAAATTCTGGTTGATTCAGCTCCAAATGCAAAACTATCAATTGGTTCAGTCACCACTGTTAGCAGCTTAATCAAGTGCACTGTTGAAAGGATCAAAGCTGCAGTGTGTGTGACAGCACCCCTCTAA 2160 0.4597 MFHSNALDSSQQNSENELERNRDDESGNEIMEAPPSGDDQDTDQRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQVKAQHERHENTILKTENEKLRAENARYKEALSNATCPGCGGPPALGEMSFDEQHLRIENARLREEIERMSGMAAKYVGHPGSSYSNMSSHSHMPSRSVDIGGGSNYGSQSGMVGEMYGGSDLQRSLPVPNDSDKPMIVELAVAAMEELTRLALSGNPLWVPGNHGNEILNEDEYLRTFPRGIGPKPLGCRSESSRESVVVIMNHINLVEILMDVNQWSTVFCGIVSRAMTLEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRDNYFVRYCKQHPGGSWAVVDVSLDNLRPSAISRSRRRPSGCLIQELPNGYSKVTWVEHVEVDDRAVHDLYKALVNSGLAFGAKRWVAALDRQCERLASAMATNIPPGDLCVITSPEGRKSMLKLAERMIMSFCTGVGASTAHAWTALTPTDCDDVRVMTRKNTDEPGRPPGIVLCAATSFWLPVPSKRLFDFLRNENSRSEWDILSNGGLVQEMAHIANGRDPGNCVSLLRVNGANSSQSNMLILQESCTDSTGSYVIYAPVDLVAMNVVLSGGDPDYVALLPSGFAILPDGPAPSGGPILDVGAGGCLLTVAFQILVDSAPNAKLSIGSVTTVSSLIKCTVERIKAAVCVTAPL* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02974 719 Gene3D - 36 121 - -
Rops6g02974 719 Pfam START domain 241 459 IPR002913 GO:0008289
Rops6g02974 719 SMART START_1 240 459 IPR002913 GO:0008289
Rops6g02974 719 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
Rops6g02974 719 Pfam Homeodomain 48 103 IPR001356 GO:0003677
Rops6g02974 719 SUPERFAMILY Bet v1-like 232 461 - -
Rops6g02974 719 CDD homeodomain 48 106 IPR001356 GO:0003677
Rops6g02974 719 FunFam Homeobox-leucine zipper protein GLABRA 2 240 458 - -
Rops6g02974 719 Gene3D - 303 462 IPR023393 -
Rops6g02974 719 MobiDBLite consensus disorder prediction 1 56 - -
Rops6g02974 719 FunFam Homeobox-leucine zipper protein HDG1 36 121 - -
Rops6g02974 719 SUPERFAMILY Homeodomain-like 33 105 IPR009057 -
Rops6g02974 719 MobiDBLite consensus disorder prediction 15 29 - -
Rops6g02974 719 Coils Coil 99 134 - -
Rops6g02974 719 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 44 713 IPR042160 -
Rops6g02974 719 SMART HOX_1 46 109 IPR001356 GO:0003677
Rops6g02974 719 CDD START_ArGLABRA2_like 235 458 - -
Rops6g02974 719 SUPERFAMILY Bet v1-like 479 710 - -
Rops6g02974 719 ProSitePatterns 'Homeobox' domain signature. 80 103 IPR017970 GO:0000981|GO:0006355
Rops6g02974 719 ProSiteProfiles START domain profile. 231 462 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02974 Rops-Chr6 52702512 52705563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02974 1 713 Homeobox Transcription Factor Family AT4G21750 74.468 0.0 1124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops6g02974 START 7.4e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02974 K09338 - tcc:18597106 1159.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02974 6 52702512 52705563 Rops6g02974 6 52702512 52705563 ECH
Rops6g02974 6 52702512 52705563 Rops1g02437 1 47161444 47165439 ECH
Rops1g02437 1 47161444 47165439 Rops6g02974 6 52702512 52705563 PCT