Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02973 ATGTGCACAACTGCCGCAGCCAGCACAGTTTCTCTGAGGTTTGGGACTATGGTGAGGGTTAGTGTGTTGAATGATGCTCTCAAGAGCATGTACAATGCTGAAAAAAGGGGGAAGCGCCAGGTCATGATTAGGCCTTCCTCAAAAGTGATTATAAAATTCCTTTTGGTGATGCAGAAGCATGGATACATTGGAGAGTTCGAATATGTTGATGATCACAGGGCTGGAAAAATTGTGGTTGAATTGAATGGTAGATTAAATAAGTGTGGTGTTATTAGCCCCCGTTTTGATGTTGGTGTCAAAGAGATAGAAGGATGGACTGCAAGGCTGCTTCCCTCAAGACAGTTTGGGTATATTGTCTTGACTACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTGGGTGAACGTGGAAATGGAACTCCTCATCAGAAGTTCCATGTTCATGGCGTCCAGCTCTGTGAAGAGGTGTCACATTCTTTCTGTCTCTCCCTCCGTTCGTGTTGGATGTGTATCTATTTTGCAGCCAGCGTTGTGGACCTACTGTTTAGCGAGCTTTTCTGTTGTCTTCCTGCTTCTTTGAGCATCTGGTTTGCACCAAATTCACTTGAGGATGTAGATGTTGAGAGATTCAAGTTGAGCTTGAAGAAAAGGTTCCGACACAATCCGATAATGGGGTCAACTCTTATAGTCACAACGTATGTTCTCCTATCAGTTGGCTTGGTAGCAGTCAGAAGTAGCACTTATAGTGTGTAA 765 0.4405 MCTTAAASTVSLRFGTMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGERGNGTPHQKFHVHGVQLCEEVSHSFCLSLRSCWMCIYFAASVVDLLFSELFCCLPASLSIWFAPNSLEDVDVERFKLSLKKRFRHNPIMGSTLIVTTYVLLSVGLVAVRSSTYSV* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02973 254 FunFam 40S ribosomal protein S15a 86 142 - -
Rops6g02973 254 FunFam 40S ribosomal protein S15a 17 85 - -
Rops6g02973 254 ProSitePatterns Ribosomal protein S8 signature. 116 133 IPR000630 GO:0003735|GO:0005840|GO:0006412
Rops6g02973 254 Pfam Ribosomal protein S8 23 138 IPR000630 GO:0003735|GO:0005840|GO:0006412
Rops6g02973 254 PANTHER 40S RIBOSOMAL PROTEIN S15A 17 141 IPR000630 GO:0003735|GO:0005840|GO:0006412
Rops6g02973 254 Gene3D - 17 85 - -
Rops6g02973 254 SUPERFAMILY Ribosomal protein S8 20 138 IPR035987 GO:0003735|GO:0005840|GO:0006412
Rops6g02973 254 Gene3D - 86 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02973 Rops-Chr6 52651979 52662170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02973 17 138 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 97.541 4.13e-86 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02973 K02957 - tcc:18590745 244.588