Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02958 ATGCAAGACTTTGTGCGAAGAGATATCTTAGATCAAAGAAGTTGTCTAACACTGGAGGTTATAGATGGTCCTTCTCGTGGACTTCATTGTTCTGTACAGTCAACAAATCCCTTTCATCTACCACTGACCTTGGGAAGAGTTTCTCGAAGTGATATGTTGATAAAAGATTCAGAAGTGTCTGGAAAGCATGCTCTAATCAAGTGGAATTTGGATAAAATGAGATGGGAGTTGGTAGATATGGGTAGCCTAAATAGAACACTTTTGAATTCTTGGGCAATCAACCATGCAGACACTGGAAGCCGGCGATGGGGTGATCCAGTCAGTCTTGTTAATGGAGATAGCATAATACTTGGAACAATATCAAAAGTAATTGTTCATATTACCACACAAAATCAGCAGCATATTCCCTTTGGAGTGGGTATGGCTTCAGATCCCATGGCTTTGCGTAGAGGGGGAAAGCATGGTGGAGATGGGGCTGCCAAATCAGCTAGCAATATATTATCAAATGCATTAATACGAGAGAGGGTTTTATCACTCTGCGATGCTTCTTATATTCTTCGAGATGCATTTTCTCAAACAGAAGCATCCATGAATCACCATTATGAGGGATGCACAGCAACAGTCCTTCTGGTGTGGGCTGATGGTGATGAAAATTTTTTTGCGCAATGTGCAAATGTTGGGGACTCCTCCTGTATCATGAGTGCTGGTGGCAAGCAAATCAAGATGAAAGAAGATCATAAGATAACAAGTTATTCTGAAAGACGCAGAATTGAACAAACAGGTGAACCATTGAAAGACGGGGAAGCACGTCTATATGAGCCTTATATAAGTCAAGTCGTGCATATTGATCAAACAAGCAGGGCTTTTGCCATTCTAGCTAGTGATGGGTTATGGGATGTCATCAGCATGAAGAAGGCAAATCAGCTAGTGCTTCAGATGAGGGAGAGATAG 951 0.4164 MQDFVRRDILDQRSCLTLEVIDGPSRGLHCSVQSTNPFHLPLTLGRVSRSDMLIKDSEVSGKHALIKWNLDKMRWELVDMGSLNRTLLNSWAINHADTGSRRWGDPVSLVNGDSIILGTISKVIVHITTQNQQHIPFGVGMASDPMALRRGGKHGGDGAAKSASNILSNALIRERVLSLCDASYILRDAFSQTEASMNHHYEGCTATVLLVWADGDENFFAQCANVGDSSCIMSAGGKQIKMKEDHKITSYSERRRIEQTGEPLKDGEARLYEPYISQVVHIDQTSRAFAILASDGLWDVISMKKANQLVLQMRER* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02958 316 Gene3D - 152 316 IPR036457 -
Rops6g02958 316 CDD PP2Cc 154 313 IPR001932 -
Rops6g02958 316 Pfam FHA domain 43 118 IPR000253 GO:0005515
Rops6g02958 316 SMART PP2C_4 110 314 IPR001932 -
Rops6g02958 316 Pfam Protein phosphatase 2C 271 315 IPR001932 -
Rops6g02958 316 Pfam Protein phosphatase 2C 152 268 IPR001932 -
Rops6g02958 316 PANTHER PROTEIN PHOSPHATASE 2C 154 309 IPR015655 GO:0004722|GO:0006470
Rops6g02958 316 SUPERFAMILY SMAD/FHA domain 14 125 IPR008984 GO:0005515
Rops6g02958 316 ProSiteProfiles Forkhead-associated (FHA) domain profile. 42 93 IPR000253 GO:0005515
Rops6g02958 316 SUPERFAMILY PP2C-like 154 312 IPR036457 -
Rops6g02958 316 SMART FHA_2 41 93 IPR000253 GO:0005515
Rops6g02958 316 ProSiteProfiles PPM-type phosphatase domain profile. 138 316 IPR001932 -
Rops6g02958 316 Gene3D - 11 147 - -
Rops6g02958 316 FunFam Protein phosphatase 2C 70 11 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02958 Rops-Chr6 52411702 52416734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02958 7 316 PP2C-type Phosphatase Gene Family AT5G19280 51.053 3.43e-121 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02958 K01090 - gmx:100170642 488.419