Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02956 ATGGCAATGGTGAAAGATGAGAAGGAAGAAGAAGAAGAGAAGAAGGAGAAGACGAAGACACTAATCTGTGCCCTCAACCTTCTCTCTCGTGACCTCCCTCTCCCACCTCACCTTCTCTCCTCCGTTTCTTCCATCTATCATAACCACCATGATGATACTGGGAGTTCTAGGGAAGATTTAATGTCAGATCTTGAAGATGCACTATCGCAGCAGCGGCTGAAATGTGTGTCTGGTAGCAAATTGGAGGAAGCAAGGGCAAACCGTTATCAAAGTCAGATTCGGCATCGATTGAATCAGCTTGAAGGATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACAAAATGCCTGCTTGAATTTTATGGACTAAAGCTAGCAGAGTTGCAGTCAAAGGTTCGGTCTGATGTGAGTTCTGAATACTGGCTCAATGTTAAATGTGCATATCCTGATAGGCAATTGTTTGATTGGGGCATGATGAGATTGCATCGTCCACTGTATGGTGTTGGAGATCCATTTGCCATGGATGCCGATGATCAATTAAGGAAGAAACGGGATGCTGAGAGACTGTCAAGATTAGAAGAGCAGGAGAAAAATCATATAGAGACTAGAAAAAGAAAATTTTTTGCAGAAATACTTAATACTGTTCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGGGCAACCCGAGCAGAAAAATTGAGATTCCAAGCCTTGAAGGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACTCTAAACATTCTGATGGTACTGAACCCTTGGAAGATTCTGAAGCTGATTTACCTGAGTCAGATGCTTCTAAGAATGGAATTTCTAAGGAATCTCCTCTAGATGAAGATACAGATTTGACAGATTATGATCATAATGGTGATTCTGGAGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAACAGGTCACTGAGCAGCCATCCATGCTTCAAGGTGGAGAATTGAGACCATACCAGATAGAGGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACAATACAAACAATTTCGCTGATAGCATATCTTTTGGAACACAAGGGTGTGACTGGTCCCCACTTGATTGTTGCTCCAAAGGCTGTTCTACCAAATTGGATGAATGAATTCTCAACATGGGTTCCTAGCATTACAGCTATTCTTTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAGGAAGAATTGTCAGGAGAGGGGAAATTTAATGTTCTGCTAACACACTATGATCTTATAATGAGAGACAAAGCATTTCTCAAGAAAATTCACTGGTACTACTTGATTGTGGATGAAGGGCATCGGTTGAAGAATCATGAGTCGACTCTAGCAAGAACCTTGGAGACTGGCTATCACATTCGACGAAGACTTTTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAAGAATTGTGGTCCCTGCTAAATTTTCTCCTTCCAAACATTTTTAACTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTCTCTCTATCAGATGAAGAACATCTATTGATCATTCGGCGTCTGCATCAAGTGATAAGGCCCTTCATATTAAGAAGGAAAAAGGATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTTACTGATGTAGGCAGAGTTGGCTTGGACAATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTGTTCGTTGGAGAATATGATATGTATAATCGTAAGGAGGAGATTGTCAGAGCATCAGGCAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTCTCACAAATGACTAGACTCATGGACATTCTCGAAATTTATTTGCGACTTCATGATTTCAAGTATCTTAGACTTGACGGCTCAACAAAAACTGAGGAAAGAGGCTCTCTACTACGGAAATTTAATGCTCCTGACTCCCCCTACTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTACAAACAGCAGATACTGTTATAATCTTTGACAGCGATTGGAACCCACAAATGGATCAACAGGCTGAGGACCGAGCACATCGCATTGGACAAAAAAAGGAAGTTAGGGTTTTTGTGTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTAGAGCGCGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATTCAGGCAGGACTTTTCAACACAACTTCGACAGCCCAGGACAGAAGAGAAATGTTAGAGGAGATTATGCGTAGAGGTACAAGCTCACTCGGGACAGATGTGCCTAGTGAGAGAGAAATAAACCGCCTTGCCGCTCGATCAGAAGAGGAATTCTGGCTGTTTGAGAAAATGGATGAAGAAAGAAGACAAAAGGAGAATTACAGATCTCGTCTATTGGAAGAGCATGAATTGCCAGATTGGGTGTATTCTCCACTTAACAAGGATGATAAGGTCAAAGATTTCAATGGTAGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTAAGTGATTTACAATGGATGAAGGCTGTGGAGAATGGGGAAGACATATCAAAGTTTTCGGTCAAAGGGAAAAGAAGAGATCGCCTCTCATCTGACAACGTTGGGCAAGCCAGTGATAATACGGGGCAAGAAGAAAGTTTATCAGAGTTAAGGACTGAAAGTGTTCCCATGGCAAATGAGAGAACAAGTGAAGAAGATAGTTACCATTTGACCCCTGCCTCCAAGAGATTCAAGCCTGAAGGAACAAATTTTCAGAAACATGCATACGAGGATGTCAGAGGAAGTGGTCTAAACCAGCATGTGTTATCCTGGAATACTCACAGAAAGAAGAGATCAAGCTATCTTGGCCAGGGTTCATTATCCGAGACTAGAGGGCAGAATTCAAATGGAAGAGCAAACTGGAATTGA 3261 0.4177 MAMVKDEKEEEEEKKEKTKTLICALNLLSRDLPLPPHLLSSVSSIYHNHHDDTGSSREDLMSDLEDALSQQRLKCVSGSKLEEARANRYQSQIRHRLNQLEGLPSSRGEDLQTKCLLEFYGLKLAELQSKVRSDVSSEYWLNVKCAYPDRQLFDWGMMRLHRPLYGVGDPFAMDADDQLRKKRDAERLSRLEEQEKNHIETRKRKFFAEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKHSDGTEPLEDSEADLPESDASKNGISKESPLDEDTDLTDYDHNGDSGDLLEGQRQYNSAIHSIQEQVTEQPSMLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLLEHKGVTGPHLIVAPKAVLPNWMNEFSTWVPSITAILYDGRLDERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKKIHWYYLIVDEGHRLKNHESTLARTLETGYHIRRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLSDEEHLLIIRRLHQVIRPFILRRKKDEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGEYDMYNRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKYLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSEEEFWLFEKMDEERRQKENYRSRLLEEHELPDWVYSPLNKDDKVKDFNGSVTGKRKRKEVVYADTLSDLQWMKAVENGEDISKFSVKGKRRDRLSSDNVGQASDNTGQEESLSELRTESVPMANERTSEEDSYHLTPASKRFKPEGTNFQKHAYEDVRGSGLNQHVLSWNTHRKKRSSYLGQGSLSETRGQNSNGRANWN* 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02956 1086 SMART SnAC_2 898 958 IPR029295 GO:0042393
Rops6g02956 1086 MobiDBLite consensus disorder prediction 974 1032 - -
Rops6g02956 1086 MobiDBLite consensus disorder prediction 328 350 - -
Rops6g02956 1086 Pfam SNF2-related domain 384 672 IPR000330 GO:0005524|GO:0140658
Rops6g02956 1086 PANTHER SNF2/RAD54 HELICASE FAMILY 173 992 - -
Rops6g02956 1086 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 393 559 IPR014001 -
Rops6g02956 1086 Coils Coil 1 21 - -
Rops6g02956 1086 FunFam Probable ATP-dependent DNA helicase CHR12 612 911 - -
Rops6g02956 1086 Gene3D - 352 605 IPR038718 -
Rops6g02956 1086 FunFam Chromatin structure-remodeling complex protein SYD 372 615 - -
Rops6g02956 1086 Gene3D - 612 910 IPR027417 -
Rops6g02956 1086 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 695 862 IPR001650 -
Rops6g02956 1086 MobiDBLite consensus disorder prediction 295 352 - -
Rops6g02956 1086 Pfam Helicase conserved C-terminal domain 692 805 IPR001650 -
Rops6g02956 1086 SMART ultradead3 377 570 IPR014001 -
Rops6g02956 1086 Coils Coil 896 916 - -
Rops6g02956 1086 CDD SF2_C_SNF 683 816 - -
Rops6g02956 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 606 IPR027417 -
Rops6g02956 1086 Pfam Snf2-ATP coupling, chromatin remodelling complex 898 958 IPR029295 GO:0042393
Rops6g02956 1086 MobiDBLite consensus disorder prediction 1059 1086 - -
Rops6g02956 1086 MobiDBLite consensus disorder prediction 984 1008 - -
Rops6g02956 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 859 IPR027417 -
Rops6g02956 1086 MobiDBLite consensus disorder prediction 1009 1024 - -
Rops6g02956 1086 SMART helicmild6 721 805 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02956 Rops-Chr6 52385861 52395861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02956 688 833 RAD5 or RAD16-like Gene Family AT5G43530 37.333 3.80e-21 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops6g02956 SNF2_N 3.7e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02956 - - gmx:100786280 1923.29