Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02945 ATGTTGCTGTTCAAAATTCCAGTTGCAGCTTTAGTTTTCTTTTGCTTCTCTGTGAGCTTTACAGTGATAAACACAACTGAAGCAGCTACTGATGAGTCCTTCGTCGTTCATTACTGTCCAAATACAAGCACTTTTTCTCCCAACAGTATCTACCAAACTAATCTCAAACAAGTCCTTTCTTGGCTTTCATCAAATTCCACCAGAAGAAATGGCTTCTACAACACCACCGCCGGTATCAACAACCCCGGCAACACCGCACACGGTGCCTTCCTCTGCCGTGGAGATCTCACAGCCGAAGCATGCCAAGACTGTGTTTCCATCGCAGCCAAACGAGTACTTCAAGAGTGTCCTATAGAGAAGGAATCAGTGATTTGGTTCGCTGAGTGCATGATACGTTACTCAAACCAGTCCTTCTTCTCCACAGCTGCGGAAGTACCAGTGTATTCTCTCATGAACACGGCCAGTGTGTCGGAGGAGATTCGCTTCATGCAACTGCTGGGGGACACAATGAACGCTGCGGCGGTGGAAGCAGCAAAAGGTGGAGGTGACAAGAAGTTTGCAACCAAAGAAGCTAACTTTTCTAGCTTCCAAACTTTGTACACGCTCACACAGTGCACCCCGGATTTGTCACAGTCAAGCTGCCAAAAGTGCCTCACAATAGCAATTACTCAATTGCCTTCATGCTGTAATGGAAAGCAAGGGGGAAGAGTGTTGATTCCTAGTTGTAATATTAGGTATGAATTTTATCCATTTTACAACAAGGTGACTGTGCCAGCCCCAGAAGAACCAAGGCCAAACGCAGAAGAAAAATCCCGGGTCTCAGTAGCGATAATCATTGCAATTGTCGCTCCAATTGTGGTTGTTTTGCTGGTTACCTTCTTTGCCATCTGGATCATATATGTAAGGGGAAGAAAAAAATACAATTCGGTGCCCGAAGAAAGTGTTCAAATTTCCAGGGAAGAGTATTTGCAATTTGATTTTGGTACAATCATAGCGGCCACTAACAACTTCTCTGATGATAATAAATTAGGGGAAGGAGGATTTGGTGAGGTTTACAAGGGTACACTATATAATGGGCAAGATATTGCTGTGAAGAGACTATCAAGAAACTCTAGACAAGGCATAGATGAATTCAAGAATGAGGTGGTTTTGGTAGCAAAACTACAACACAAAAATCTTGTTAGGCTTCTGGGATTTTGCTTGGATGGGGAAGAAAAGATGCTCATTTACGAATTCTTGCCTAACAAAAGCCTGGACCATTTTCTATTTGACCCTGAAAAAAGGCAGCAGTTGAATTGGCCAAGAAAATACAAGATAATAGAAGGAATTGCTAGAGGAATGCTATATCTTCATGAAGATTCTCGACTCAGAATCATACATCGTGATCTTAAAGCTAGTAATATATTATTAGACGATGATTTAAATCCAAAAATTTCAGATTTTGGGATGGCAAGAATTTTTGGTGCTGATCAAACTCGAGGAAACACAGATAGAGTTGTTGGAACATTAGGTTACATGTCTCCAGAATATGCAATGCATGGAGAGTTTTCTGTCAAAACGGATGTGTACAGCTTTGGTGTCCTTGTTCTAGAGATAATAAGTGGAAAGAAGATCACATCCTTCCATGAATCAGGCTATGCTGAGGACCTCTTGAACTATGCTTGGAAAAAATGGAATGATGGGACACCATTGGAGTTATTGGACATGAATTTGGGAGATTCATACTCAAGAGCTGAAGTCGCTAGATGCATCCAAGTTGGGTTATCTTGTGTTCAGGAAGATCCAGCTCAAAGGCCAACCATGCAGACAATAGTTGTAATGCTAAGCAGTCATTCTGTTACACTAGAACCACCTGAACGACCTGCGGGTTATGTTCATAGCAAAACTCAGCAGAGCTTCCCAACAAAAGAATTTGAGAACTCAGACAAGCCTACAAACCAGTCAGTTTCGGTCTCTGTTGATGAAGCATCCATCACTGAAGTGTATCCTCGATAG 1995 0.4221 MLLFKIPVAALVFFCFSVSFTVINTTEAATDESFVVHYCPNTSTFSPNSIYQTNLKQVLSWLSSNSTRRNGFYNTTAGINNPGNTAHGAFLCRGDLTAEACQDCVSIAAKRVLQECPIEKESVIWFAECMIRYSNQSFFSTAAEVPVYSLMNTASVSEEIRFMQLLGDTMNAAAVEAAKGGGDKKFATKEANFSSFQTLYTLTQCTPDLSQSSCQKCLTIAITQLPSCCNGKQGGRVLIPSCNIRYEFYPFYNKVTVPAPEEPRPNAEEKSRVSVAIIIAIVAPIVVVLLVTFFAIWIIYVRGRKKYNSVPEESVQISREEYLQFDFGTIIAATNNFSDDNKLGEGGFGEVYKGTLYNGQDIAVKRLSRNSRQGIDEFKNEVVLVAKLQHKNLVRLLGFCLDGEEKMLIYEFLPNKSLDHFLFDPEKRQQLNWPRKYKIIEGIARGMLYLHEDSRLRIIHRDLKASNILLDDDLNPKISDFGMARIFGADQTRGNTDRVVGTLGYMSPEYAMHGEFSVKTDVYSFGVLVLEIISGKKITSFHESGYAEDLLNYAWKKWNDGTPLELLDMNLGDSYSRAEVARCIQVGLSCVQEDPAQRPTMQTIVVMLSSHSVTLEPPERPAGYVHSKTQQSFPTKEFENSDKPTNQSVSVSVDEASITEVYPR* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02945 664 ProSiteProfiles Gnk2-homologous domain profile. 33 138 IPR002902 -
Rops6g02945 664 Gene3D Transferase(Phosphotransferase) domain 1 413 617 - -
Rops6g02945 664 SMART serkin_6 337 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02945 664 Gene3D Phosphorylase Kinase; domain 1 300 412 - -
Rops6g02945 664 ProSiteProfiles Protein kinase domain profile. 337 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02945 664 MobiDBLite consensus disorder prediction 625 655 - -
Rops6g02945 664 FunFam cysteine-rich receptor-like protein kinase 10 413 615 - -
Rops6g02945 664 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 32 138 - -
Rops6g02945 664 MobiDBLite consensus disorder prediction 617 664 - -
Rops6g02945 664 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Rops6g02945 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Rops6g02945 664 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 38 660 - -
Rops6g02945 664 Pfam Protein tyrosine and serine/threonine kinase 340 607 IPR001245 GO:0004672|GO:0006468
Rops6g02945 664 ProSiteProfiles Gnk2-homologous domain profile. 144 251 IPR002902 -
Rops6g02945 664 FunFam Cysteine-rich receptor-like protein kinase 10 301 412 - -
Rops6g02945 664 Gene3D - 144 251 IPR038408 -
Rops6g02945 664 Gene3D - 31 138 IPR038408 -
Rops6g02945 664 CDD STKc_IRAK 343 608 - -
Rops6g02945 664 SUPERFAMILY Protein kinase-like (PK-like) 322 628 IPR011009 -
Rops6g02945 664 FunFam Cysteine-rich receptor-like protein kinase 25 146 251 - -
Rops6g02945 664 Pfam Salt stress response/antifungal 159 248 IPR002902 -
Rops6g02945 664 Pfam Salt stress response/antifungal 39 136 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02945 Rops-Chr6 52315820 52319251 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02945 4 664 Receptor kinase-like Gene Family AT4G05200 51.546 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops6g02945 PK_Tyr_Ser-Thr 3.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02945 - - cit:127900229 781.171