Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02944 ATGGAGTTTCAGAGGCGCCAAGATCAGAGCCTCTCAGAGAGGAAGGGGCAGAAGCGGAAGCTAGAGGAGGAATTACAGGAGGAGCGTCAGATCTCGTCGGCGCCGCCCACCGCCGACGAACGTGCGGCACTTCTCGCCGACGTCGCCGAACAGGTGAGCGTCCTCGAGTCTACTTTCACGTGGAACGAAGCCGATCGAGCCGCGGCCAAGCGCGCCACTCATGCGCTCGCCGATCTTGCGAAGAATGAGGAAGTGGTGAACTTGATTGTTGAAGGAGGCGCGATTCCGGCTTTGGTTAAGCATCTTCAGGCACCGCCTCTCAGTGATCGTGTTCAGAAGCCATTGCCATTTGAGCATGAGGTTGAGAAAGGGAGTGCTTTTGCACTAGGACTTCTTGCCGTCAAGCCAGAACATCAGCAGCTCATTGTTGACAATGGAGCCTTAACACATCTTGTTGATCTTTTGAAGAGGCATAACAATGGCTCAACTTCTCGTGCCATTAATAGTCTCATTCGCAGGGCTGCGGATGCTATTACTAATCTCGCTCATGAGAACAGCAGCATTAAAACCCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGAATTTGCTGATCCAAAAGTGCAAAGAGCAGCTGCTGGTGCGCTGCGAACCCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCAACTCTGATTCTGATGCTGCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTAGTCCACTCTTCCCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTGCAACCAGTTATTGGATTACTTAGCTCCTGCTGCTCTGAAAGCCAGAGGGAAGCAGCCTTGTTGCTTGGGCAGTTTGCAGCAACCGATTCAGACTGCAAAGTTCACATTGTACAGAGAGGTGCTGTCCGACCTTTGATAGAGATGCTTCAGTCTTCTGATGTACAACTCAGAGAAATGTCTGCCTTTGCATTAGGGAGATTGGCCCAGGACACACATAACCAAGCTGGTATTGCACACAATGGTGGCTTAGTGCCATTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCCTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTCATTAGGGTAGGCGGGGTTCAGAGACTGCAGGATGGAGAGTTTATTGTTCAAGCTACTAAAGACTGTGTTGCGAAGACGTTGAAAAGATTAGAGGAGAAGATTCATGGTCATGTGCTGAACCATTTGTTATATCTTATGCGAGTTTCAGAAAAGGGTTTTCAAAGACGAGTTGCTTTGGCTCTTGCACATCTTTGTTCTCCAGATGATCAGAGAAGAATTTTTATTGATCACCATGGTCTTGAGTTGCTTATTATGCTTCTTGGCTCATCTAGCTCTAAGCAGCAACTTGACGGTGCTGTAGCTTTATGCAAGTTGGCCAATAAAGCCTCGACTCTGTCTCCTGTGGATGCTGCTCCACCTTCTCCAACACCACAGGTCTATTTAGGAGAGCAGTATGTAAACAATGCTACATTGTCCGACGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCATCGAATTTGTCTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTACAGGGAGAAGGATGCCAGAGACATAGAGATTCCAAATATCAGATGGGAAGTTTTTGAGTTGATGATGAGATTTATATATACGGGATCAGTTGATGTCACTCTGGATATTGCTCAAGATCTTCTTAGAGCAGCTGATCAATACCTTTTAGAAGGACTTAAGAGACTCTGTGAGTACACGATTGCACAGGATATAACACTAGAGAATGTGTCAAATATGTATGAACTTTCAGAAGCCTTCCATGCAGTATCATTGAGGCACGCATGCATCCTTTTCATCTTGGAGCAATATGATAAGTTGAGTGCAAGGCCAGGCCACTCTCTTCTGATTCAGCGTATAATTCCTGAGATCCGCAATTACTTTGTTAAAGCTCTTACAAAGGCCAACTCCCATAACCGACTGTAG 2118 0.4547 MEFQRRQDQSLSERKGQKRKLEEELQEERQISSAPPTADERAALLADVAEQVSVLESTFTWNEADRAAAKRATHALADLAKNEEVVNLIVEGGAIPALVKHLQAPPLSDRVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALTHLVDLLKRHNNGSTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLEFADPKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSSDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGHVLNHLLYLMRVSEKGFQRRVALALAHLCSPDDQRRIFIDHHGLELLIMLLGSSSSKQQLDGAVALCKLANKASTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDITLENVSNMYELSEAFHAVSLRHACILFILEQYDKLSARPGHSLLIQRIIPEIRNYFVKALTKANSHNRL* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02944 705 Pfam BTB/POZ domain 532 634 IPR000210 GO:0005515
Rops6g02944 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Rops6g02944 705 MobiDBLite consensus disorder prediction 1 29 - -
Rops6g02944 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
Rops6g02944 705 Pfam Armadillo/beta-catenin-like repeat 311 350 IPR000225 GO:0005515
Rops6g02944 705 Pfam Armadillo/beta-catenin-like repeat 192 224 IPR000225 GO:0005515
Rops6g02944 705 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Rops6g02944 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Rops6g02944 705 Gene3D - 269 425 IPR011989 -
Rops6g02944 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 93 147 IPR000225 GO:0005515
Rops6g02944 705 MobiDBLite consensus disorder prediction 1 37 - -
Rops6g02944 705 ProSiteProfiles BTB domain profile. 539 606 IPR000210 GO:0005515
Rops6g02944 705 SUPERFAMILY ARM repeat 58 410 IPR016024 -
Rops6g02944 705 SMART BTB_4 539 636 IPR000210 GO:0005515
Rops6g02944 705 SUPERFAMILY ARM repeat 437 608 IPR016024 -
Rops6g02944 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
Rops6g02944 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 196 IPR000225 GO:0005515
Rops6g02944 705 Gene3D Potassium Channel Kv1.1; Chain A 519 665 IPR011333 -
Rops6g02944 705 Gene3D - 426 514 IPR011989 -
Rops6g02944 705 SMART arm_5 82 134 IPR000225 GO:0005515
Rops6g02944 705 SMART arm_5 269 309 IPR000225 GO:0005515
Rops6g02944 705 SMART arm_5 135 183 IPR000225 GO:0005515
Rops6g02944 705 SMART arm_5 352 392 IPR000225 GO:0005515
Rops6g02944 705 SMART arm_5 185 225 IPR000225 GO:0005515
Rops6g02944 705 SMART arm_5 311 351 IPR000225 GO:0005515
Rops6g02944 705 SMART arm_5 227 267 IPR000225 GO:0005515
Rops6g02944 705 SMART arm_5 467 507 IPR000225 GO:0005515
Rops6g02944 705 Gene3D - 167 268 IPR011989 -
Rops6g02944 705 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 701 IPR044282 -
Rops6g02944 705 FunFam Armadillo/beta-catenin repeat family protein 530 674 - -
Rops6g02944 705 Coils Coil 11 31 - -
Rops6g02944 705 SUPERFAMILY POZ domain 531 633 IPR011333 -
Rops6g02944 705 Gene3D - 31 166 IPR011989 -
Rops6g02944 705 CDD BTB_POZ_ARIA_plant 526 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02944 Rops-Chr6 52295319 52309292 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02944 198 404 U-box Gene Family AT3G46510 29.545 4.59e-15 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Rops6g02944 BTB 6.1e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02944 - - gmx:100784348 1257.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02944 6 52295319 52309292 Rops6g02944 6 52295319 52309292 ECH
Rops1g02417 1 46826928 46834609 Rops6g02944 6 52295319 52309292 PCT