Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02942 ATGGAGTTTCAGAGGCGCCAAGAACAGAGCCTCTCTGAGACCAAAGGAAAGAAGCGAAAGCTAGATGCGCTCACCGCCGACGTCACCAAACAGGTGAGCATACTCAAGTCGACATTCACATGGAACGAAGCCGATAGAGCAGCGGCCAAGTGTGCCACTCATGCGCTCGCTGATCTCGCGAGGAATGTTACAGATGATGTGAGGAACGTGATTGTTGAAGGAGGCTCGATTCCGGCTTTGGTTAAGCATCTTCAGGCGCCGCCTCTCAGTGATTATGTTCAGAAGCCCTTGCCATTTGAGCATGAGGTAGAGAAAGGGAGCGCTGTTGCACTTGGAGTTCTTGCCGTCAAGAATTTTTTTAGATGTTCTGCAAGTGTCCACACACTGATGTTTCATATGATTTTGCAAACTAAGATTAAGCCAGAACATAAGCAGATCATTGTTGACAATGGAGCCTTAACACATCTTGTTGATCTTTTAAAGAGGCATAAAAATGGCTTAACTTCTCCTGCCATTAATAGTCTCACTAGTAGTGCTGCGTTCACTATTGCTAATCTTGCTCGTGCGAACCACAGCATTCAAACCCATGTCAGGATGGAAGGTGGGATTCCACCACTTGTTCATTTGCTTGAATCCTCTGATACAAAGGTGCAAAAAGCAGCTGCTGGTGCACTGCAAAGCCTGACTTATTATCATGATGAAAATAAAAATCAGGTTGTTGAATGCAACGCTCTTCCAACTCTGATTCTAATGCTGCAATCTGAAGATGCTGCCATTCATTACAAAGCGACTGTATTACAGATTGCTTTGATTGGAAATCTAGTTCGCCCTTCCCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTCTACAACCAATTATTAGATTACTTAGCTCCTGCTACTCTGAAAGCCAGCTAGCAGCAGCCTTGTTGCTTCAACAGTTTGCAGACACTGATCCAGATTGCAAAGTTCACATTGTACAGAGAGGTGCTTTACGACCTTTGATAGAGATGCTTCAGTCTCCTGATGAGCGACTCAGAAAAATTTCTCTCTTGGTGTTAGGGACATTGGCCCAGGACACACATAACCAAGCTGGTATTGCACACCATGGTGGCTTAGTGCCATTGCTCAAGCTTCTTGACTCAAAAAATGTGTATTTGCAACATAATGCTGTCGTGGCTCTTTATATCCTCGCAGATAATGAGGATAATGTGTCCGATTTAATTATGGTAGGTGGAGTTCAGAGATTGCACGATGGAGAGTTTATTATTCAAGATACAAAAGATTGTGTTGCCAAGATGTTGAAAAGATTAAAGGAGAAGGTTCACGGCCGTGTGCTGAACCATTTGTTATATCTCATGCAAGTTTCAGAAAAGGGTTTTCAAAGACGAGTTGCTTTGGCTCTTGCACATCTTTGTTCTGCAGATGATCAAAGAAGAATTTTTATTGATCACCATGGTCTTGAGTTGCTTATTGGGCTTCTTGGCTCATCTAGCTCTAAACAGCAACTTGATGGTGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCCTCGACTCTGTCTCCTGTGGATGCTGCTCCACCTTCTCCAACACCACAGGTCTATTTAGGAGAGCAGTATGTAAATAATGCTACATTGTCTGATGTAACGTTTTTGGTTGAAGGCAAACGATTTTATGCTCATAGAATTTGTCTACGTGCATCTTCAGATGCATTCCGTGCAATGTTTGGTGGTGGTTATAGGGAGAAGGATGCCAGGGACATAGAGATTCCAAATATTAGATGGGAAGTTTTTGAGTTGATGATGAGATTTATATATACTGGATCAGTTGATGTCACTCCAGATGTTGCTCTAGATCTTCTTCGAGCAGCTAATCAATATCTTTTAGAAGGACTTAAGAGACTCTGTGAGTACACGATTGCACAGGATATATCACTAGAGAATGTGTCAAATATATATGAACTTTCAGAAGCCTTCAATGCACTATCATTGAGGCACACATGCATCCTTTTTATCTTGGAGCAATATGATAAGTTGAGTGCAAGGCCAGGGCACTCTCTTCTTATTCAGGAGGTAATTCCAGAAATCCACAATTATTTTATTAAAGATCTTACGAACACCAACTCCCATAACCGACTATAG 2145 0.4228 MEFQRRQEQSLSETKGKKRKLDALTADVTKQVSILKSTFTWNEADRAAAKCATHALADLARNVTDDVRNVIVEGGSIPALVKHLQAPPLSDYVQKPLPFEHEVEKGSAVALGVLAVKNFFRCSASVHTLMFHMILQTKIKPEHKQIIVDNGALTHLVDLLKRHKNGLTSPAINSLTSSAAFTIANLARANHSIQTHVRMEGGIPPLVHLLESSDTKVQKAAAGALQSLTYYHDENKNQVVECNALPTLILMLQSEDAAIHYKATVLQIALIGNLVRPSPNIKKEVLLAGALQPIIRLLSSCYSESQLAAALLLQQFADTDPDCKVHIVQRGALRPLIEMLQSPDERLRKISLLVLGTLAQDTHNQAGIAHHGGLVPLLKLLDSKNVYLQHNAVVALYILADNEDNVSDLIMVGGVQRLHDGEFIIQDTKDCVAKMLKRLKEKVHGRVLNHLLYLMQVSEKGFQRRVALALAHLCSADDQRRIFIDHHGLELLIGLLGSSSSKQQLDGAVALCKLANKASTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLRASSDAFRAMFGGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTPDVALDLLRAANQYLLEGLKRLCEYTIAQDISLENVSNIYELSEAFNALSLRHTCILFILEQYDKLSARPGHSLLIQEVIPEIHNYFIKDLTNTNSHNRL* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02942 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 331 373 IPR000225 GO:0005515
Rops6g02942 714 Pfam BTB/POZ domain 541 643 IPR000210 GO:0005515
Rops6g02942 714 Gene3D - 172 266 IPR011989 -
Rops6g02942 714 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 8 118 IPR044282 -
Rops6g02942 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 201 236 IPR000225 GO:0005515
Rops6g02942 714 CDD BTB_POZ_ARIA_plant 535 650 - -
Rops6g02942 714 Gene3D Potassium Channel Kv1.1; Chain A 531 674 IPR011333 -
Rops6g02942 714 Pfam Armadillo/beta-catenin-like repeat 197 229 IPR000225 GO:0005515
Rops6g02942 714 Pfam Armadillo/beta-catenin-like repeat 320 359 IPR000225 GO:0005515
Rops6g02942 714 Gene3D - 420 530 IPR011989 -
Rops6g02942 714 SUPERFAMILY POZ domain 540 642 IPR011333 -
Rops6g02942 714 SUPERFAMILY ARM repeat 47 360 IPR016024 -
Rops6g02942 714 SMART arm_5 361 401 IPR000225 GO:0005515
Rops6g02942 714 SMART arm_5 140 188 IPR000225 GO:0005515
Rops6g02942 714 SMART arm_5 64 116 IPR000225 GO:0005515
Rops6g02942 714 SMART arm_5 476 516 IPR000225 GO:0005515
Rops6g02942 714 SMART arm_5 320 360 IPR000225 GO:0005515
Rops6g02942 714 SMART arm_5 232 276 IPR000225 GO:0005515
Rops6g02942 714 SMART arm_5 278 318 IPR000225 GO:0005515
Rops6g02942 714 SMART arm_5 190 230 IPR000225 GO:0005515
Rops6g02942 714 SUPERFAMILY ARM repeat 270 678 IPR016024 -
Rops6g02942 714 Gene3D - 14 171 IPR011989 -
Rops6g02942 714 Gene3D - 267 419 IPR011989 -
Rops6g02942 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 372 414 IPR000225 GO:0005515
Rops6g02942 714 ProSiteProfiles BTB domain profile. 548 615 IPR000210 GO:0005515
Rops6g02942 714 SMART BTB_4 548 645 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02942 Rops-Chr6 52279354 52286250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02942 203 473 U-box Gene Family AT1G23030 27.972 6.27e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Rops6g02942 BTB 1e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02942 - - gmx:100784348 1041.57