Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02923 ATGTTTGATAAAGCAGCACCCATGATTGCTCAATGTCTAGTTCTAGCCTTTTTTCTGAGATTCAGCTTCACTAATAGTTTGTCTCACCCTTTAGACCCTCTATCACCTGTTGAAATCAACAAAACAAGGCACATAGTTCAAGGGTCTTACCTTGGTGCTATTCCTAATCTGACCTATCACTTTGTGGATGTTGAAGAACCAGACAAAAAGAATGTCCTAAAGTGGCTATCTTCAAATACAAAAGAAAAGCTTATCATTCCTCGTCAAGCCAAGGTAGTTGTTAGAGCCAAGGGTGAGACTCATGAGCTTGTAGTGGAATTAACAAAAGGGTCCATTGTATCAGATAAAATCTACACAGGTCATGGATACCCTCCTTTGACATTCAATGAGCTTTTTCTAGCCAGCAAACTGCCTCTTAAATATCCCAAGTTCCAAAAGTCAATAACCAAAAGAGGCTTGAACTTGTCTGAAGTTTCTTGTGTACCACTTACAATTGGTTGGTATGGAGAACAAATCACAAGGAGAGCCCTTAAAGTGACATGCTTTTATAGGGGAGGATCAGTTAATGTATGGGCAAGGCCTATTGAGGGAATCACAGTGGATGTTGATGTGGATTCAATGCAGATTACTAAGTACAATGACAGGTACATAGCCCCTATGCCTAAAGCTGAAGGTACAGATTTTCAATCTTCAAGCAGCAGCAGGCCTAAAACATCTGCTTCATGTAACATATCAGATATTGGGTTCACCATCAAAGGCCATGAGGTGAAATGGGCTAACTGGGTTTTCCATGTTGGGTTCAATGCAAGGGCAGGAATGATCATATCAACTGCTTCTATATTTGATGCTCGAAAACAAAAGTATAGAAGAGTGTTGTATAGGGGTCATGTGTCTGAGACATTTGTTCCTTACATGGATCCTACAAAGGAATGGTATTATAGGACTTTCATGGATGCTGGGGAATTTGGTTTTGGACGTGCAGCTGATAGCTTGCAGCCAAGGGTTGATTGCCCTGGCAATGCAGTGTATATGGATGGCTATATGGCTGGGCCTAATGGAGAGGTGCAACAAGTACCAAGGGCTATTTGCATTTTTGAGAGGAAATCTGGAAATGTGGCCTGGAGGCACATGGAAATCAACAATCCCATAAAAATGATAAGAAATGGAGAGCCTGAAATTACTTTGGTGGTCAGAATGATTGCTACTGTGGGAAACTATGATTATGTTCTTGATTGGGAATTCCTAAGAAGTGGCAGTATAAAAGTTGGGGTGGACCTGACAGGCATACTTCAGATGAAAGCAGTCCCATATACACAAAATAATCAGATAAAAGAAAGAGTGTTTGGAACCTTGGTGGCTGAAAACACCATAGCCAATTATCATGATCACTACCTAACCTACTATCTTGACCTTGACATTGATGATAATGACAATTCCTTCATCAATGCCAAGTTACAAAGGGCAACAGCAACCGGCTTTGGAACACCAAGGAAGAGTTACTGGACAGTTGTTAGAGAAGCTGCCAAGAGGGAAGCCGAGGCTAGAATTCGGCTCGGCTTGGAACCAGCTGACTTGTTAATAGTCAACCCAAATAAAAGGACAAAGCTAGGGAATCAAGTGGGCTACAGGCTCATCAGTGCACAGCCATTAACTTCTCTTCTGTCTGATGATGACTACCCACAAAGAAGAGCATCTTACACAAAGTATCAATTGTGGGTCACTCCCTATAACAAGTCAGAGAGATGGACTGGTGGCTTCTATGCTGATAGGAGCCATGGAGATGATGGCTTAGCCGTTTGGAGCCAAAGTGCTCACTATCTTGTTGGTATTTGGTTTGATAAGATTCCACAGAAAACTTTGGTTTGGTCTGCAAACCGTGATGATCGAGCTCAAATTGGCTCAACCATCAATCTTACAATGAGTGGCCAATTTGTGCTGCAACATGCAAACAAGACCTCATTTCTAATCTACAATGGTACGAATGCAACTTCTGCTATGATGCAGGATAATGGGAATTTCATCTTGATGAACTCTCTTTCAAACATCATCTGGCAGAGTTTTGATTCACCAACAGATACTATTCTACCAGGCCAAACTTTGAACATGAGTGAAATGCTCTTTTCCAATGCAAATGGAACAGTAGACTACTCAACTGGGCAATACAAGTTGGAGATTCAAAAAGCTGATGGCAACATTGTTTTATCTTCTTTTCGGTTTGAGGATCCTGGATATTGGTATACTTCAACTGCTCAGAATTCAAGTGTGAGACTTGTCTTCAACAACATTACAGCTTTTCTTTATGCTGTCAATGGCACACACAACATATTTAACATGACCACACAAGTGCAAAATCCAGTTGGAAACTACTATCATCGAGCAACGATCAACGACCTTGGGAATTTTCAACAGCTGATTTACCTTAAAGAAGGTGGAGACCATTGGTCAGTTATATGGCAGGCCATAACACAGCCATGCACAGTGAATGCCATTTGCGGGGTGTATGGCTTTTGCACTTCACCTGATAATAGCACAGTCAATTGTAGTTGTTTGCCTGGATACACACCTTTTGATCCAAGTGTTCCCTCCAAAGGGTGCTATCTCAGTGTGGCCATGGATTTCTGTGCTGCAAATTCCTCTTCATTAGACTTTACAGTGGTAGAAATTCAAGATGTTGATATACAAAACAAATTATTTTTTGATCTTCAAAGAATTGACTCGTCTGATTTGGACAGTTGCAAGAAGGAAGTGATGGATGACTGCTTCTGCATGGCTGGTGTTTTGATTGACTCAGTTTGTTATAAGAAAAGAACTCCTTTTTCAAATGCCAGAATAAGTATCCCTGCCACTAGCAATAGTGTGGCTTTGATTAAAGTTCCTCATGCTCATGAAGATGATGAAAATGATTCACCTTCTCGGAAAGAGGAACTCCCAAGGCCAAAGCCTATGGACATCAATCTGAAGGCATTTTCATTCCAAGAGTTGAGAGAAGCAACAAATGGCTTCAGGAACAAACTTGGCCATGGAGCCTTTGGTACTGTATATAGTGGAGTTTTAACATTGGAGGGTGAACAGGTTGAGGTTGCTGTGAAACAACTGGAAGAAGTAGAGGAAAAAGATTTTGGAATGGCAAAGCTACTAATGAAAGACAGAACTCGAACAAGCACAAATCTGAGAGGGACAATGGGATATTTGGCACCAGAATGGCTTAAAAATGCACCTGTCATTGCAAAAGTTAATGTCTACAGCTTTGGTGTCATGTTGTTGGAAATCTTATTTTGCAGAAGGCACATTGAGTTGCACCAAATTGGAGATGGAAAAGAAGGTGGTGATGATGTGATACTTATAGATTGGGTTCTGTATTGGGCAAAAGAGGGGAATCTAAGAGTCATTGTGAGCCATGATCTTGAAGTTGTCAACGATTTCAAGAGGTTTGAGAGAATGGCAATGGTTGGATTGTGGTGCCTATGTCCTGACCCAACTCTTAGGCCATCTATTTCAAAGGTGATACAGATGTTGGAAGGAAATACAGAAGTTGGTGTTCCACCACTGTTTGATGGGCAAATGTTGTAA 3570 0.4115 MFDKAAPMIAQCLVLAFFLRFSFTNSLSHPLDPLSPVEINKTRHIVQGSYLGAIPNLTYHFVDVEEPDKKNVLKWLSSNTKEKLIIPRQAKVVVRAKGETHELVVELTKGSIVSDKIYTGHGYPPLTFNELFLASKLPLKYPKFQKSITKRGLNLSEVSCVPLTIGWYGEQITRRALKVTCFYRGGSVNVWARPIEGITVDVDVDSMQITKYNDRYIAPMPKAEGTDFQSSSSSRPKTSASCNISDIGFTIKGHEVKWANWVFHVGFNARAGMIISTASIFDARKQKYRRVLYRGHVSETFVPYMDPTKEWYYRTFMDAGEFGFGRAADSLQPRVDCPGNAVYMDGYMAGPNGEVQQVPRAICIFERKSGNVAWRHMEINNPIKMIRNGEPEITLVVRMIATVGNYDYVLDWEFLRSGSIKVGVDLTGILQMKAVPYTQNNQIKERVFGTLVAENTIANYHDHYLTYYLDLDIDDNDNSFINAKLQRATATGFGTPRKSYWTVVREAAKREAEARIRLGLEPADLLIVNPNKRTKLGNQVGYRLISAQPLTSLLSDDDYPQRRASYTKYQLWVTPYNKSERWTGGFYADRSHGDDGLAVWSQSAHYLVGIWFDKIPQKTLVWSANRDDRAQIGSTINLTMSGQFVLQHANKTSFLIYNGTNATSAMMQDNGNFILMNSLSNIIWQSFDSPTDTILPGQTLNMSEMLFSNANGTVDYSTGQYKLEIQKADGNIVLSSFRFEDPGYWYTSTAQNSSVRLVFNNITAFLYAVNGTHNIFNMTTQVQNPVGNYYHRATINDLGNFQQLIYLKEGGDHWSVIWQAITQPCTVNAICGVYGFCTSPDNSTVNCSCLPGYTPFDPSVPSKGCYLSVAMDFCAANSSSLDFTVVEIQDVDIQNKLFFDLQRIDSSDLDSCKKEVMDDCFCMAGVLIDSVCYKKRTPFSNARISIPATSNSVALIKVPHAHEDDENDSPSRKEELPRPKPMDINLKAFSFQELREATNGFRNKLGHGAFGTVYSGVLTLEGEQVEVAVKQLEEVEEKDFGMAKLLMKDRTRTSTNLRGTMGYLAPEWLKNAPVIAKVNVYSFGVMLLEILFCRRHIELHQIGDGKEGGDDVILIDWVLYWAKEGNLRVIVSHDLEVVNDFKRFERMAMVGLWCLCPDPTLRPSISKVIQMLEGNTEVGVPPLFDGQML* 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02923 1189 Gene3D Copper amine oxidase, catalytic domain 249 614 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Rops6g02923 1189 Pfam D-mannose binding lectin 619 704 IPR001480 -
Rops6g02923 1189 SUPERFAMILY alpha-D-mannose-specific plant lectins 606 749 IPR036426 -
Rops6g02923 1189 SUPERFAMILY Amine oxidase N-terminal region 26 123 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Rops6g02923 1189 PANTHER COPPER AMINE OXIDASE 28 603 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Rops6g02923 1189 Gene3D - 126 219 - -
Rops6g02923 1189 ProSitePatterns Protein kinases ATP-binding region signature. 1005 1030 IPR017441 GO:0005524
Rops6g02923 1189 SMART serkin_6 999 1172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02923 1189 SUPERFAMILY Amine oxidase catalytic domain 248 606 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Rops6g02923 1189 Pfam Protein kinase domain 1039 1170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02923 1189 Pfam Copper amine oxidase, enzyme domain 248 603 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Rops6g02923 1189 Gene3D - 690 829 - -
Rops6g02923 1189 Gene3D Transferase(Phosphotransferase) domain 1 1041 1177 - -
Rops6g02923 1189 Gene3D Phosphorylase Kinase; domain 1 960 1040 - -
Rops6g02923 1189 FunFam Amine oxidase 27 124 - -
Rops6g02923 1189 Gene3D - 27 124 - -
Rops6g02923 1189 ProSitePatterns Copper amine oxidase topaquinone signature. 395 408 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Rops6g02923 1189 ProSiteProfiles Bulb-type lectin domain profile. 573 688 IPR001480 -
Rops6g02923 1189 MobiDBLite consensus disorder prediction 960 980 - -
Rops6g02923 1189 SUPERFAMILY Protein kinase-like (PK-like) 988 1173 IPR011009 -
Rops6g02923 1189 Pfam Copper amine oxidase, N2 domain 29 117 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Rops6g02923 1189 SMART blect_4 563 690 IPR001480 -
Rops6g02923 1189 Pfam S-locus glycoprotein domain 778 855 IPR000858 GO:0048544
Rops6g02923 1189 SUPERFAMILY Amine oxidase N-terminal region 122 228 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Rops6g02923 1189 FunFam Amine oxidase 125 218 - -
Rops6g02923 1189 Pfam Copper amine oxidase, N3 domain 124 216 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02923 Rops-Chr6 52009532 52018130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02923 1039 1175 Receptor kinase-like Gene Family AT1G71830 37.226 2.96e-22 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Rops6g02923 Cu_amine_oxid 3.2e-104 CL0103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02923 K00276 - aprc:113871840 1066.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02923 6 52009532 52018130 Rops6g02923 6 52009532 52018130 ECH