Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02913 ATGAAGGAGAAGGTAGAGTTGGTGACTGAAGAAGAAGCAGGTGAATCCTCACTCATTATCTGTGAGATTTGTGCAGAAGCGAAAGAGAATGATGAGATGTTTAGGAACCAGAGATGTGACCATTCATTCTGCACTGACTGTGTCATAAAACAAGTGGCTAAAAAGATACAAGACAACATAACTGTTGTTTCATGTCCTGGTTTGAACTGCAAGGGTGTGTTGGAGCTTGATGCTTGCAGGTCAACGCTCCTAAAAGACCTTATTGATAAGTGGGATGATGCACTGTGTGAGGCTCTTTTGCTTACAGCTAAGAAATTCTATTGTCCCTTTAGGGATTGTTCTGCTATGTTGCTGGATGGGAATGAAGAAGGGGGAGACATAAGGGAGTGTGAGTGCCCATTTTGCCATAGGCTCTTCTATGCAAGGTGTCATGTTCCTTTGCATCCTGGGATTGGATGTGAGGAGTTTCAGACACTCAATGAGGATGAGAGAGGGAGGGAAGATCTCCTTGTTAGAGAACTTGCTAATGAGAAGAAATGGCGTACAAATAAGTGCTCATCATGA 564 0.4326 MKEKVELVTEEEAGESSLIICEICAEAKENDEMFRNQRCDHSFCTDCVIKQVAKKIQDNITVVSCPGLNCKGVLELDACRSTLLKDLIDKWDDALCEALLLTAKKFYCPFRDCSAMLLDGNEEGGDIRECECPFCHRLFYARCHVPLHPGIGCEEFQTLNEDERGREDLLVRELANEKKWRTNKCSS* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02913 187 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 185 IPR031127 GO:0004842|GO:0016567
Rops6g02913 187 SMART ibrneu5 89 153 IPR002867 GO:0008270
Rops6g02913 187 ProSitePatterns Zinc finger RING-type signature. 39 48 IPR017907 -
Rops6g02913 187 ProSiteProfiles TRIAD supradomain profile. 17 187 IPR044066 -
Rops6g02913 187 FunFam RBR-type E3 ubiquitin transferase 16 102 - -
Rops6g02913 187 ProSiteProfiles Zinc finger RING-type profile. 21 66 IPR001841 -
Rops6g02913 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 99 IPR013083 -
Rops6g02913 187 SUPERFAMILY RING/U-box 15 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02913 Rops-Chr6 51891136 51891699 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02913 14 186 C3H Transcription Factor Family AT2G19610 23.784 7.84e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02913 K11975 - cave:132186569 257.299