Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02910 ATGGAACCGGGCTCGAGAACAGGTGGCCCTTCTGGGGTTGTGGTGAAGAATAGGAGCTCTTCTGGGTGTTTGATTGTTAGAAAAAAAGGGGATGGTTTGGGTGGTGGGGTCGGTGGTTCTTCAAGTTCTAGGAAGCAGTATGAATCGAAGAAAGTGAGGAAAAAGGCGAAGGTCGAATTGAGTGATTCGGGATCAAGCGATGAGTTACTGATGCCTCCTGCTAGGAGGCTTGGCCCTGAGACTATTCGAGTTTGTAATGGCTTGACTGCTTTTGAGCGGGGTGAAATCAGGAGGAAGAGGGAGAGAATGGAGCAAATTAGGCGTAATGGGGATGGCATGGATGAGGAAAATTACTTGGAGAGGAGGGAAAGGAAACGTAATAAGTTGGATGTGTTTGATTTTGATGAATATGATGGTATGGATGTGGATATGATGAGAAGGAGGCATTTTGATGATAATGGGGTTGGTTTAGGAGCAGGTGGAAGGTTTATGGGAACAATGCATGCTGCCAGGGGTAGCATTGATAGGGAATTTGAAACCGGTCCAAGCAGACACATTGTGGATAAGAGAAAAAATTCCTATTATGACAGGGCAAGTGGCTTGAATCTGGGAGATGGTGTTGACCATAGTAGGTACAAGATGAACAGGGATGGAGCTCAGCGTCATCCACCATTGTTGAGGGAGAAGTTTAATTCTGATGAATCAATTAGGGTTCAGGGGAAAAATGGTGTATTGAAGGTGATGGTTAACAAGAAGAAGGTAGGCGGGCCACTAGAACACTATAATCATCGCAAACCTGTTGACAGCAGACAAAGTTTAAGGGCTGAGGACACTACCAAGAGGAATGTTCAGATCCAACCGTCATCTTACTTGGAAACAAAACCTGCTGAGAAACAGGGTTTACTTGCTAGGCCAGAGAAGAAACAGATAGCAGCAAGAAAATCATTGTCAAGTAAGGACAGTAAGGGTGATGAGCAGGATTCAGATAACAGTGACACATCATTGAATCTGGGAGTAAAGAATATGAAAGCTCGCAAGTCTTCAAAAAAGGTAACCTCTGAAAATGAAAAGACTCCTATGAATGAAAAACTCCCAACTACAAAAATGAAAGAAGGAAAAATCAGGCGTGGTAGTGGCACAGAAAAACAGAAACTACGGGAACGAATACGGGAGATGCTCCTGAATGCAGGTTGGACCATTGACTATCGCCCACGAAGGAATAGAGACTATCTAGATGCAGTTTACATTAATCCTGGGGGTACAGCCTATTGGTCAATCATCAAGGCCTACGATGCACTTCAAAAGCAATTGAACGATGATGATCATGAATCCAAGCCCAAAGGGGAGAGTTCTTCGTTTGCTCCCATCTCTGATGACGTGCTGAGTCAGTTGACAAGGAAAACTCGGAAGAAGATGGAGAAAGACTTGAAGAAGAAACAAATGGAAAGGGATGATAGTGATAGTGATAGTGGAAAAGAACTGCAGATTAGAAGAATTGCCAGCAAAAAGCATGATATGAATGACAATGATAGTGATAGCAATGAAGAGAAGTTAAGCTCCTTTATAAAGCAAGGAAGTAAATCAATGAAAACTAAAATGATTGAAAACACTGTTACCGGTGGTAGTTCTAAAAGCCAGAACACTACCCATCACTCAAATGATGGAACTGATAAATCATTCTCTGGAAACGATCCTCATCTCCTACATGGAAGGAAAAGTAGAAAACATGGAAGGTGCACTTTATTAGTTCGTAGCTCTAACAAGGGATTGACTTCAGAATCTGATGACTTCGTTCCATATACGGGCAAACGAACTGTGCTTTCCTGGTTGGTTGACTCTGGGGTAGTACAGGTCAGTCAGAAGGTTCAGTACCGTAGAAGGAAGCGGGTAATGCTGGAGGGATGGATCACAAGAGAAGGCATTCATTGTGGCTGCTGTAGTAAGATCCTCACGGTTTCAAAGTTTGAGCTTCATGCTGGAAGCAAATTGCCCCAGCCATATCAAAACATATATTTGGATTCTGGAGTTTCTCTTCTACAGTGCCAGATGGATGCGTGGGATAGGCAAGAGAATTCTGAGAAAATCAGTTTCCATTCAGTAGATATCGATGGCAACGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGTTGCTTGGATATACAGATGCTTCCTCCTGGGGAATGGCATTGTCCAAATTGCACCTGTAAATTTTGTGGACTAGCTAGTGAAACTATTGGCGAAGAAGATGATGCAACCGTATATGCCCTACATACCTGTGACTTGTGTGAGAAAAAATATCATGACTGTTGTGTTAAGGATATGGATGCCCTTCCAACCAACTCCAATACGTCAGGGCCTTCCTTTTGTGGAAAGGGCTGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACCTCGGTACCAAGCATGAACTTGATGCAGGCTTTACATGGTCTCTTATTCATAGAACAGATGAGGACTCAAAGGCAGCTAGTAGGGGAATTACCCAGAGGGTGGAATCCAACTCCAAGCTAGCTGTTGCACTGACTGTGATGGACGAATGCTTTTTACCTGTTGTTGATCGGAGGAGTGGGATCAATTTAATCCATAATGTTTTATATAATAGTGGGTCAAACTTCAGTCGGTTGAATTATAGTGGCTTTTATACTGCTATTTTGGAGCGAGGGGATGAAATAATTTCTGCAGCATCTATCAGGTTCCATGGGACTAAGTTAGCAGAGATGCCGTTCATTGGAACTCGCCATATATATAGGCATCAGGGAATGTGCCGCCGGCTTTTTTCTGCCATTGAATTGGCTATTTGCTCTCTGAAGGTTGAGAAACTGGTCATCCCTGCAATTTCTGAACTCGTTCATACTTGGACAACAGTTTTTGGCTTCACACATCTTGAGGAATTGCTCAGACAAGAAATGAGGTCATTGAATATGTTGGTCTTCCCTGGTATTGATATGTTGCAGAAGCTGCTAGTGGAGCAAGGAAAACTTGAGGGTGCTGAGAAAATTGAAAATGGAGACTTGGCTATGGCTAATAGGTTAGATATGGATTCCTCAACTCTGCAAGATCCTCATGGAAGTGATGATGCTAGTTCAGATCCTGCCAATGAGATGAACAATGAATGTAGTGATGCTTCTCAAGAACTAAACAATCAAGTTTTGATTGGCAGGACTGCATGCTCCAAATCTCATTCTGAGGAAAGATCATCTCATTCTGCTTCAGATAATTGTGCTTCTCCTTCTAATACTAGTCATGAAATACTCGAAAAGAAAAATAAACCAGGGATGACTTCTGTTAATGATAAATTGCATCCTTCCCCCAAATGTAAACGCATTTCACCACATGACAAGTCTATGACTAGTCTTCCATTGGATGCTCCAGATTGCCATGAAATTCCAGCTTTGGGTCAGGAAACTGCTTGTTCTGACCCTGATACTGCAAATAACTTGGGTGAACCTGTTTCTGACAAGAAATGTCATGTTTTCACTGATATGAATGGTGATTCGTCAGAGCTTGACAGCAATCCAGTGTTGGGTTCTCAAGTGGTGGATAATATGTCTTTTAAAGAGGTTGATATGAATGATGCCGATGATGAGGTTCTCGAAGCTGGTCCTTCAATGAATTTAGCTGAAGAGAATATTACCAGGGAGAATAATGAAAATGTAGATGTCCCTGGTTCTGTTTTTAATCATGCTGGTGAGAGTTCCTTGCAGGTAAGATCTGATTTGAATGGTGAAATTGCATACAAGGGGGAAAAGAATTTACATTTGGACACAGAAGCTGCTTCAAATGAAATGCATTTGGATGAAACTGGCCTAAATGCTTCTGGTGATAGTTCTGAGACTGATCCAGCGTAA 3921 0.4229 MEPGSRTGGPSGVVVKNRSSSGCLIVRKKGDGLGGGVGGSSSSRKQYESKKVRKKAKVELSDSGSSDELLMPPARRLGPETIRVCNGLTAFERGEIRRKRERMEQIRRNGDGMDEENYLERRERKRNKLDVFDFDEYDGMDVDMMRRRHFDDNGVGLGAGGRFMGTMHAARGSIDREFETGPSRHIVDKRKNSYYDRASGLNLGDGVDHSRYKMNRDGAQRHPPLLREKFNSDESIRVQGKNGVLKVMVNKKKVGGPLEHYNHRKPVDSRQSLRAEDTTKRNVQIQPSSYLETKPAEKQGLLARPEKKQIAARKSLSSKDSKGDEQDSDNSDTSLNLGVKNMKARKSSKKVTSENEKTPMNEKLPTTKMKEGKIRRGSGTEKQKLRERIREMLLNAGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQLNDDDHESKPKGESSSFAPISDDVLSQLTRKTRKKMEKDLKKKQMERDDSDSDSGKELQIRRIASKKHDMNDNDSDSNEEKLSSFIKQGSKSMKTKMIENTVTGGSSKSQNTTHHSNDGTDKSFSGNDPHLLHGRKSRKHGRCTLLVRSSNKGLTSESDDFVPYTGKRTVLSWLVDSGVVQVSQKVQYRRRKRVMLEGWITREGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLDSGVSLLQCQMDAWDRQENSEKISFHSVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCPNCTCKFCGLASETIGEEDDATVYALHTCDLCEKKYHDCCVKDMDALPTNSNTSGPSFCGKGCKELFEHLKKYLGTKHELDAGFTWSLIHRTDEDSKAASRGITQRVESNSKLAVALTVMDECFLPVVDRRSGINLIHNVLYNSGSNFSRLNYSGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRHIYRHQGMCRRLFSAIELAICSLKVEKLVIPAISELVHTWTTVFGFTHLEELLRQEMRSLNMLVFPGIDMLQKLLVEQGKLEGAEKIENGDLAMANRLDMDSSTLQDPHGSDDASSDPANEMNNECSDASQELNNQVLIGRTACSKSHSEERSSHSASDNCASPSNTSHEILEKKNKPGMTSVNDKLHPSPKCKRISPHDKSMTSLPLDAPDCHEIPALGQETACSDPDTANNLGEPVSDKKCHVFTDMNGDSSELDSNPVLGSQVVDNMSFKEVDMNDADDEVLEAGPSMNLAEENITRENNENVDVPGSVFNHAGESSLQVRSDLNGEIAYKGEKNLHLDTEAASNEMHLDETGLNASGDSSETDPA* 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02910 1306 MobiDBLite consensus disorder prediction 347 383 - -
Rops6g02910 1306 MobiDBLite consensus disorder prediction 1 74 - -
Rops6g02910 1306 MobiDBLite consensus disorder prediction 518 560 - -
Rops6g02910 1306 Pfam Tify domain binding domain 634 684 IPR032308 -
Rops6g02910 1306 SMART PHD_3 711 752 IPR001965 -
Rops6g02910 1306 MobiDBLite consensus disorder prediction 255 383 - -
Rops6g02910 1306 ProSitePatterns Zinc finger PHD-type signature. 712 751 IPR019786 -
Rops6g02910 1306 SUPERFAMILY FYVE/PHD zinc finger 701 757 IPR011011 -
Rops6g02910 1306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 700 770 IPR013083 -
Rops6g02910 1306 MobiDBLite consensus disorder prediction 1038 1065 - -
Rops6g02910 1306 MobiDBLite consensus disorder prediction 256 277 - -
Rops6g02910 1306 MobiDBLite consensus disorder prediction 1081 1149 - -
Rops6g02910 1306 MobiDBLite consensus disorder prediction 299 329 - -
Rops6g02910 1306 MobiDBLite consensus disorder prediction 278 293 - -
Rops6g02910 1306 PANTHER PHD FINGER PROTEIN 12 342 1128 IPR042163 GO:0003714|GO:0045892
Rops6g02910 1306 MobiDBLite consensus disorder prediction 1290 1306 - -
Rops6g02910 1306 CDD PHD2_CHD_II 712 751 - -
Rops6g02910 1306 Pfam PHD-finger 712 754 IPR019787 -
Rops6g02910 1306 MobiDBLite consensus disorder prediction 438 575 - -
Rops6g02910 1306 ProSiteProfiles Zinc finger PHD-type profile. 709 754 IPR019787 -
Rops6g02910 1306 MobiDBLite consensus disorder prediction 1282 1306 - -
Rops6g02910 1306 MobiDBLite consensus disorder prediction 463 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02910 Rops-Chr6 51874634 51882848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02910 4 1028 PHD Transcription Factor Family AT4G14920 50.577 0.0 950
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops6g02910 TDBD 1.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02910 - - mtr:25485216 1836.62