Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02884 ATGTTCTCTTCCACATATGACTCCAACCCTTTCCCTAGCTTCCCCTCATCTTCTTACCCTACCCTTCCTTTTCTTATTGATCCTGAAAATGATTTTGCAAATAACACCCTTCTTGATGATCCACTTGGTGTTCCCTTCTTACCCAATACACATGATGCTCCATTCCCAGATGAAACTGTCGCCAATTTGGCAGTTGCAGACTGCACTGCTATGCTTGAACATGATACAAATAATGGCTATGCTGCTAACTATGGTAGCATTCCTAATTTTCTCACCCAGAAACCAGCCATAACCAAGAAAGATAGGCACAGTAAGATTCACACATCTCAGGGTTTGAGGGACCGCAGGGTGAGATTATCTAGCGAAATAGCCCGCAAGTTCTTTGATCTTCAGGACATGCTAGAGTTTGACAAACCCAGTAATACCCTTGAGTGGCTCTTCACCAAGTCTGAGAATGCAATCAAAGAACTAGCTCGAAGTAAGCATAGCTGCAGTGAGGGTGAAAAGTGTTCCTGCAACCCTTCTGAGCCTCATGGGGTGGATTCAAATAACAAATCAATGGGGAGTGCTGCTGATGCTCCTAATAAAGGGAGGAAGTTGAAATGGACACAAAAAGATGATGTTTATGTTCAGACAAAAAAGGAGTCCAGGGAAAGAGCAAGAGCAAGAGCAAGGGAAAGGACTTGTTACAAGATGTGTAGCACTGCAGGGAGGGTGCAAGACTTGGATGAAAGGTGCCCTGCAACTGCAAATACTCAAATACTGCACCAATTTAGGTCACCTATTCAAACTGAACCTGAGCCTTGTGCAAGATGGCGTAACCTGGTTCAACCCTATCCTTACCTAATGGATAGTGAAGTACCAAGAGATGGCTTTAATGTCATTGAGGAATCTATTATGATAAAAAGGAACATGATGTCTTCTCATCACCAAAACCTTGTGATCCCTAAGGAAGCAAGTTTCAACAACAATGACTACCCTTTATTCCCCTATTCCACTCCAAATTGGGATACTAATGGCCGCTCCAACTTTTATGGAATGGCCACCATGAATCTCTCTTCATGTTTCATGAACCAGTGGGTTTCTTGCTGTCTTGATCATCCACAAGGTTGCTACCCCTTCCTGCAAGCTGTGGCCTAG 1140 0.4368 MFSSTYDSNPFPSFPSSSYPTLPFLIDPENDFANNTLLDDPLGVPFLPNTHDAPFPDETVANLAVADCTAMLEHDTNNGYAANYGSIPNFLTQKPAITKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELARSKHSCSEGEKCSCNPSEPHGVDSNNKSMGSAADAPNKGRKLKWTQKDDVYVQTKKESRERARARARERTCYKMCSTAGRVQDLDERCPATANTQILHQFRSPIQTEPEPCARWRNLVQPYPYLMDSEVPRDGFNVIEESIMIKRNMMSSHHQNLVIPKEASFNNNDYPLFPYSTPNWDTNGRSNFYGMATMNLSSCFMNQWVSCCLDHPQGCYPFLQAVA* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02884 379 MobiDBLite consensus disorder prediction 176 190 - -
Rops6g02884 379 ProSiteProfiles TCP domain profile. 99 157 IPR017887 -
Rops6g02884 379 ProSiteProfiles R domain profile. 214 231 IPR017888 -
Rops6g02884 379 Pfam TCP family transcription factor 98 234 IPR017887 -
Rops6g02884 379 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 95 237 IPR005333 GO:0003700
Rops6g02884 379 MobiDBLite consensus disorder prediction 165 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02884 Rops-Chr6 51455711 51459089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02884 88 168 TCP Transcription Factor Family AT1G67260 58.025 3.51e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops6g02884 TCP 9.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02884 - - aprc:113871835 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02884 6 51455711 51459089 Rops5g00728 5 12827605 12829271 PCT