Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02880 ATGGATATGGAAAGTGTGGATTTTAGTACCCCATCGGTGGGATCAGAAGCTGGAACTTTGAATCCAAATATCGGTGGTGGAAATCAAAGCAGTAAAGATAGGATTTTCAGAGCTGATAAAATTGATCTGAAGAGTTTGGATGCAGCGCTTGAAAAGCACTTGAGCAGGGTTTTTTCCAGAACCACTGAGGCAAATAGGCCTAAGGAACAATGGGAGATTGATTTGGCCAAATTGGAGTTACGATATGTTGTTGCTAATGGGGCCTATGGTACTGTTTATAGGGGCATTTATGATGGCCAAGATGTTGCCGTTAAAGTGTTGGACTGGGGTGAGGATGGTGTTGCAACTGCTGCTGAAACTGCTGCTTTACGAGCATCATTTCGGCAGGAGGTTACTGTTTGGCACAAACTTGATCATCCAAATGTTACAAAATTCATTGGAGCTTCAATGGGCACTTCAAATCTTAAGGTTCCTTCACATGCTGGTGCTGATCAAGATTCCCTTCCTTCCAAGGCGTGTTGTGTTATTGTTGAGTTTCTTGATGGAGGGACACTGAGACAATACTTGTCTAAAAATAGGCGAAAGAAACTTCCATATAAGGATGTGATTCAGCTGGCTTTGGACCTCGCTAAAGGTCTAAACTATCTACATTCGCAGAAAATTGTTCATCGCGATGTGAAAACTGATAATATGTTGTTAGATATTAATCAAAATTTGAAAATAGCTGATTTTGGAGTCGCTCGGATTGAAGCTATAAATCCTTGTGAAATGACTGGTGAAACTGGAACCGTTGGATATATGGCACCAGAGGTTCTAGATGGTAAGCCTTACAACAGAAAATGTGACGTTTATAGCTTTGGCATTTGCTTGTGGGAAATTTATTGCTGTGACTTGCCTTATCCAAATCTAAGCGAAGTTGATGTGTCATCTGCCGTTACTCGTCAGAATTTACGACCAGAGATTCCTAGGTGTTGTCCAAATGCCTTAGCAAATATCATGAGAAAATGCTGGGATAAAAAATCAGAAAAGCGTCCAGAAATGGATGAGGTGGTGAGAATGTTAGAAGCAATTGATACAAGCAAAGGAGGTGGCATGATACCAGAAGATCAAACTCCACTTTGTTTTTGTTTTATACGTACTCGTGGTCCTTAG 1152 0.4089 MDMESVDFSTPSVGSEAGTLNPNIGGGNQSSKDRIFRADKIDLKSLDAALEKHLSRVFSRTTEANRPKEQWEIDLAKLELRYVVANGAYGTVYRGIYDGQDVAVKVLDWGEDGVATAAETAALRASFRQEVTVWHKLDHPNVTKFIGASMGTSNLKVPSHAGADQDSLPSKACCVIVEFLDGGTLRQYLSKNRRKKLPYKDVIQLALDLAKGLNYLHSQKIVHRDVKTDNMLLDINQNLKIADFGVARIEAINPCEMTGETGTVGYMAPEVLDGKPYNRKCDVYSFGICLWEIYCCDLPYPNLSEVDVSSAVTRQNLRPEIPRCCPNALANIMRKCWDKKSEKRPEMDEVVRMLEAIDTSKGGGMIPEDQTPLCFCFIRTRGP* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02880 383 Gene3D Transferase(Phosphotransferase) domain 1 182 365 - -
Rops6g02880 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Rops6g02880 383 CDD STKc_MAP3K-like 87 354 - -
Rops6g02880 383 MobiDBLite consensus disorder prediction 1 31 - -
Rops6g02880 383 MobiDBLite consensus disorder prediction 8 30 - -
Rops6g02880 383 FunFam Kinase suppressor of Ras 1 67 161 - -
Rops6g02880 383 ProSiteProfiles Protein kinase domain profile. 78 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02880 383 SMART serkin_6 78 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02880 383 Gene3D Phosphorylase Kinase; domain 1 67 158 - -
Rops6g02880 383 SUPERFAMILY Protein kinase-like (PK-like) 64 354 IPR011009 -
Rops6g02880 383 Pfam Protein tyrosine and serine/threonine kinase 79 354 IPR001245 GO:0004672|GO:0006468
Rops6g02880 383 PRINTS Tyrosine kinase catalytic domain signature 215 233 IPR001245 GO:0004672|GO:0006468
Rops6g02880 383 PRINTS Tyrosine kinase catalytic domain signature 177 190 IPR001245 GO:0004672|GO:0006468
Rops6g02880 383 PRINTS Tyrosine kinase catalytic domain signature 325 347 IPR001245 GO:0004672|GO:0006468
Rops6g02880 383 PRINTS Tyrosine kinase catalytic domain signature 281 303 IPR001245 GO:0004672|GO:0006468
Rops6g02880 383 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 59 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02880 Rops-Chr6 51398976 51401231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02880 27 383 MAP Kinase Kinase Kinase AT3G22750 75.698 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Rops6g02880 PK_Tyr_Ser-Thr 9.7e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02880 - - gmx:100803917 619.772