Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02879 ATGGAGACACCAGAGAGGAACAAGATCAATACCCCCCTTTCCAAATCTGAGGATTCACCTGTATTTAACTTTCTTCTCAATGATCTATCTCCTATAAATCCCGTAAAGCCTGTTCACACTACTCAGACGTTAAACTCACTTTGCCTTTCATCCCCACCATCAGTTTTCACATCACCCCATGTCAACTGTCACAAGGAAACCAGATTCTTCAGGAAGCATAACCTTTTGGAGACATCAAAGCCTAAGATTTTGTCTGAAAATGTAAATAAAATATATTCACACGAAGAGGCACCTACAGATCCTACTCATGCATGTCATGACTCATGTGAGCTACAGGAAAATACTTATCAAAGGATTTCCATAGGAGATTCCTCAATTGAGCCATCGAGTGAACACACAAAGTTCTCATTCGAGCTTCCACAAGCCTTAAAATATAATTCTGGTAGCCCTGGATATGATCCTTTACTTTGTGGTGACGAGGCTAACTCTTTTTTGGAATTGCCTAGAGAGCCAGCATCAGATGTTGCCTATGTTCAGGAAGGCTCTAAAAAAGATTCAGTCGAGGGTGAAATTCAGGGAGTACATCAGATTGAGGAAAAAACTGAAGGCCCAGATTGTGATTGGGATAATTTAATTACTGATGCATCTGATGTGTTAACTTTTAGTTCCCCAATTGTCACAGAAGCTTTAAAGGGCCTAATGAATAAACAATTGCCTCCAATACAGTTTGGCAGTTTTGTGACTCTGTTACCACAATCTGCCAGTAATAATGATTATAAAATACATGTTGTTAATCCAGTTACTTCTGGTTCAGAACATGAAATTGAAGATCATCCTTCTGAACCAATAGCAGCCACAGACACAAGTCAGACACAGGACAATCTTGCCAATGTTGATTTGATGGCTAACAATCCAATTGAGAAAATCGATGATGAGCTTTTTTATGTGACACACCGTGCTATACGAAGGCGCTGTCTAGACTTTGAGATGGTCAGTATGCAAAGGAAGAACTTAGGTGATAGTTCAAACATCAGGTCTAGTATGGAAAAGTCTGATGACAGGGATATTGGTAATGAAATGCCGCTGCTTCCTACAAAACACACTGGTGATTCACAGAGGTGTGTTTTGCCAAGATTTGGTTTGCACTTGAATGCACTTACAACCTTAAAAGATCACAAAAGTATAAAAAATGAAACGATGTTTTCTGGAAGGGGACCTAATCTGCCCAGCTCCACTTCTTCCTTGCATCTCTCTGCAAGCCAAGAGCATCATCGATTGTTGGTACCTGCATCAATTGAAAGGGATTTGGAGACATCTGAGAATGAGGTTCAGCCAGCAGAAGATTGTACCCAGTCATCGGTTTCCATGGCTGGTGAAGATTTCCATCAGAATAGCCCCAAAAAGAAAAGGAAAGTACAGCGCAAGTTGGAACCAGCAGGGGAAGGGATGTCCTGCAAGCGGTGTAATTGTAAGAAATCAAAGTGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCTGGAGTCTACTGCATAGAACCTTGCTCATGTCAAGACTGCTTCAACAAACCTAGTCATGAAGATACTGTTCTTCAAACTCGCAAGCAGATTGAGTCTCGTAACCCACTTGCATTTGCTCCTAAAGTCATAAGAAGTCCTGATTCTGTACCTGAAATTGGGGATGACGCTAACAAAACTCCAGCTCCAGCACGACACAAAAGGGGATGTAATTGCAAGAAATCAAACTGCCTAAAGAAATATTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCTATAGGCTGTAGATGTGAAGGGTGCAAGAACTCATACGGTGCAAAGGATGGTTCTGCTCCTATTGATATGGAAGCTGAGCCTGAAGAAGAAACAGAAGCATGTGAAAAGGGTGTGGTGGAAAAAGCTTCACAGAAAACCGAAATTCAGAATATTGAAGACCATCCAAGTCGTGCACTTCCCACAACACCATTACGGCTTTCCAGATCATTGCTTCCATTACCCTTTTCATCAAAGGGAAAGCCACCAAGATCTTTTGTTGCTACCATCTCTTCTTCTGGATTGTTTGCCAACCAAAAGCTTGGGAAATCAAATGCTCTTCAGTATCAACCTAAATTTGAAAAGCCTTTGCAAACTACTCCAGGTGATAACACTCCTGTCACTTGCATCAAAACTTCTTCTCCAAATGGCAAGAGGGTCTCCTCTCCTAATTGTGACTTTGGATCATCTCCTCCTCGCAGAGGTGGCAGGAAGTTGATATTACAATCTATCCCTTCATTTCCTTCTCTCCCACCTCACCATTAG 2310 0.4156 METPERNKINTPLSKSEDSPVFNFLLNDLSPINPVKPVHTTQTLNSLCLSSPPSVFTSPHVNCHKETRFFRKHNLLETSKPKILSENVNKIYSHEEAPTDPTHACHDSCELQENTYQRISIGDSSIEPSSEHTKFSFELPQALKYNSGSPGYDPLLCGDEANSFLELPREPASDVAYVQEGSKKDSVEGEIQGVHQIEEKTEGPDCDWDNLITDASDVLTFSSPIVTEALKGLMNKQLPPIQFGSFVTLLPQSASNNDYKIHVVNPVTSGSEHEIEDHPSEPIAATDTSQTQDNLANVDLMANNPIEKIDDELFYVTHRAIRRRCLDFEMVSMQRKNLGDSSNIRSSMEKSDDRDIGNEMPLLPTKHTGDSQRCVLPRFGLHLNALTTLKDHKSIKNETMFSGRGPNLPSSTSSLHLSASQEHHRLLVPASIERDLETSENEVQPAEDCTQSSVSMAGEDFHQNSPKKKRKVQRKLEPAGEGMSCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPSHEDTVLQTRKQIESRNPLAFAPKVIRSPDSVPEIGDDANKTPAPARHKRGCNCKKSNCLKKYCECYQGGVGCSIGCRCEGCKNSYGAKDGSAPIDMEAEPEEETEACEKGVVEKASQKTEIQNIEDHPSRALPTTPLRLSRSLLPLPFSSKGKPPRSFVATISSSGLFANQKLGKSNALQYQPKFEKPLQTTPGDNTPVTCIKTSSPNGKRVSSPNCDFGSSPPRRGGRKLILQSIPSFPSLPPHH* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02879 769 MobiDBLite consensus disorder prediction 710 743 - -
Rops6g02879 769 MobiDBLite consensus disorder prediction 436 476 - -
Rops6g02879 769 MobiDBLite consensus disorder prediction 710 769 - -
Rops6g02879 769 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 767 IPR044522 GO:0003700
Rops6g02879 769 SMART CXC_2 483 524 IPR033467 -
Rops6g02879 769 SMART CXC_2 569 610 IPR033467 -
Rops6g02879 769 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 486 521 IPR005172 -
Rops6g02879 769 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 572 607 IPR005172 -
Rops6g02879 769 ProSiteProfiles CRC domain profile. 484 609 IPR005172 -
Rops6g02879 769 MobiDBLite consensus disorder prediction 443 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02879 Rops-Chr6 51373940 51380263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02879 17 769 CPP Transcription Factor Family AT4G14770 43.758 7.48e-154 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Rops6g02879 TCR 4.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02879 - - gmx:100811662 1056.2