Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02875 ATGGCCTCTGGTTCTCCAAAAACAGAAGGCCCTTATAGTCTTTCTATACCATTCTTGGTCTCCCTCCTAGTCATTCTCATCTCCATCAATCCCTCACACCAAGCTGAACACCACTCCCCTCTCTCCCAACTAAATCCAAGGCTCTCTAAAGCTTACATAGCTCTTCAAGCATGGAAGCACTCAATCACCTCTGATCCCAAGAACTTCACTTCTGACTGGTATGGTCCCCATGTCTGCAACTACACTGGCATCTACTGTGCACCAGCACCAGATGACCCTCACATCCTTACAGTTGCAGGAATAGACCTAAACCATGGCAACATAGCTGGTTCATTACCAGAGGATCTTGGTCTCTTAACTGACCTAGCCCTTTTCCACATAAACTCCAATCGCTTTTGTGGTTCCCTCCCAAAGAGCTTTAGCTACCTTCACCTTCTCCATGAGCTAGATATCAGTAACAACAAATTCTCAGGACCATTTCCTGAGGTTGTTCTGTGTCTTTCTTCACTAAAATACCTGGATATCAGATTCAATGAGTTCCAAGGGAATGTTCCTTCACGTCTTTTTGACCTTAAACTTGATGCCCTTTTCATCAACAGCAACAAATTTCAATTCTCATTGCCTGAAAACTTGGGGAACATTCCAGCTTCTGTGCTTGTGTTTGCAAACAATGATCTAAAGGGTTGTCTACCATCAAGTTTGGCAAAAACGAAGGATACCCTTAATGAGATTATCATCATGAATAGTGGACTAACTGGTTGTTTGCCAAAGGAAATAGGGTATTTGGACAAAGTGACAGTGTTTGATGTGAGCTTTAACAAGTTGGTTGGTGAATTGCCTGAATCCATGAAAGGAATGAAGAGTTTGGAGCAGTTGAATGTGGCACATAACAAGTTGTCTGGGTCTATTCCTGAGAGTATATGCACGTTACCAAGGTTGGAGAACTTCACGTATTCATACAACTACTTCTGCACTGAATCATCATTGTGTCTCAAGTTGGCTGATAAAGATGATCGCAAGAATTGTATCCCTCATAGGCCATTGCAAAGGTCACATGAGGAATGTGCTGCTTTTTATGCACATCCTATTCATTGTAGTGCATTTGGTTGCTCAAGTGCTCCTCCTCCTCCACCTCCACCACCACCTCCTCCACCTCCTCCACCACCACCTCCTCCTCCTCCTCCTCCACCTCCACCACCACCACCTCCTCCACCTCCACCACCTCCCCCGCCGCCAGTTTATTACCACCACTATCCTTGA 1260 0.4492 MASGSPKTEGPYSLSIPFLVSLLVILISINPSHQAEHHSPLSQLNPRLSKAYIALQAWKHSITSDPKNFTSDWYGPHVCNYTGIYCAPAPDDPHILTVAGIDLNHGNIAGSLPEDLGLLTDLALFHINSNRFCGSLPKSFSYLHLLHELDISNNKFSGPFPEVVLCLSSLKYLDIRFNEFQGNVPSRLFDLKLDALFINSNKFQFSLPENLGNIPASVLVFANNDLKGCLPSSLAKTKDTLNEIIIMNSGLTGCLPKEIGYLDKVTVFDVSFNKLVGELPESMKGMKSLEQLNVAHNKLSGSIPESICTLPRLENFTYSYNYFCTESSLCLKLADKDDRKNCIPHRPLQRSHEECAAFYAHPIHCSAFGCSSAPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPVYYHHYP* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02875 419 Gene3D Ribonuclease Inhibitor 216 342 IPR032675 -
Rops6g02875 419 Pfam Leucine rich repeat N-terminal domain 54 86 IPR013210 -
Rops6g02875 419 FunFam Leucine-rich repeat extensin-like protein 1 52 213 - -
Rops6g02875 419 MobiDBLite consensus disorder prediction 372 406 - -
Rops6g02875 419 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 231 326 - -
Rops6g02875 419 PRINTS Proline rich extensin signature 372 384 - -
Rops6g02875 419 PRINTS Proline rich extensin signature 384 405 - -
Rops6g02875 419 PRINTS Proline rich extensin signature 405 419 - -
Rops6g02875 419 SUPERFAMILY L domain-like 52 328 - -
Rops6g02875 419 Gene3D Ribonuclease Inhibitor 50 215 IPR032675 -
Rops6g02875 419 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 30 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02875 Rops-Chr6 51341976 51343295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02875 45 370 Leucine-rich Repeat extension Gene Families AT3G22800 70.031 2.22e-166 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02875 - - gmx:100818195 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02875 6 51341976 51343295 Rops6g02875 6 51341976 51343295 ECH