Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02874 ATGGGGAAGACAGGCAAGTGGCTTAGAAACTTCTTGACAGGGAAGAAAGACAAGGAAAAGGAGAAGGAAAAATCTGCAAACAACCTGAATTTATCAAATGGAACAGAAAATCCAACCACTCCAAATTCAACAACCCCAAAGGAGAAAAAGAGATGGAGTTTTAGAAGATCATCAGCCACAGCCACAGCCACAACCACACCAACAGCTTCCAAGGAATTGAATTTTGTAGAATCAAATGTCACTGCTTCACAGACAGTGCAAACTGCAACAGATGTTCAGAATGAGCAAAGGAAACATGTCATGGCCGTGGCTGCTGCTACAGCAGCAGCAGCTGATGCTGCAGTGGCAGCTGCACAGGCTGCAGCTGCTGTGATCCGCTTAACTTCTGGTTCCAATGGAACATCTAAAAGTACTGAAGAGGTTGCTGCCATTAAAATCCAATCTGTGTTTCGGTCTTACTTGGCAAGAAAAGCATTGTATGCTCTAAGAGGATTAGTGAAGTTGCAGGCACTAGTAAGGGGTCACCTTGTGAGGAAACAGGCCAAGACAACACTGAGATGCATGCAGGCTTTGGTGACAGCACAAGCCAGAGCTCGTGCTCAGAGGATCCGAATGGTGTCAGAAGGAAAGCATAGTCAAAATCACAGGAATACTACAGAGAACAATTTATTCAGGCATATATATAATGAAATGGACATAGGCTTGGAAGACAACATCAAGATTGTGGAGATGGATGTTTGTGAATCAAAAGGTAACTCCAGAAGCAGCAGTATACCTGGACATCATGAACAATCTGACCACAGATTTTCAACACATTATTCAACAAATGGTTCACACTCAAAGGAAGAAAACTACAAGGTATCACCAGCTCCATCAGCTTTGACAGAGTTTAGTCCAGGAGCCTGCAGTGGTCATTTTGAGGACTGCTTCAGTACAGCACAAAGCAGCCCCCAATACCACTCTGCAATGTCTAGAGTAGACGATTCAAAGCATCCTTTTGCTTTCCCTAGGCCAGCTTATGCAGAATCTATGTCCTATGACTACCCTTTGTTCCCAAATTACATGGCTAATACAGAATCATCAAGGGCCAAAGTCAGATCACAAAGTGCACCAAAACAAAGACCAGATTCATTTGAGAGGCAACCAAGCAGGAGAAGAGTTTCAGTGGAGGGAAGAAATGTCCCAAGGCCAGTGAGGATGCAGAGGTCATCTTCACATGTGGGTGCCACTGCTCAGAACTACCAATATCCATGGTCAATCAAGCTTGACAGATCCACAGTTTCACTCAAAGACAGCGAATGTGGCTCTACAAGTACAGTGCTCACAAACACTAATTACTGCAGATCTCTTGTTGCATATAATCCAAATGGAGATAGATACTGA 1383 0.4389 MGKTGKWLRNFLTGKKDKEKEKEKSANNLNLSNGTENPTTPNSTTPKEKKRWSFRRSSATATATTTPTASKELNFVESNVTASQTVQTATDVQNEQRKHVMAVAAATAAAADAAVAAAQAAAAVIRLTSGSNGTSKSTEEVAAIKIQSVFRSYLARKALYALRGLVKLQALVRGHLVRKQAKTTLRCMQALVTAQARARAQRIRMVSEGKHSQNHRNTTENNLFRHIYNEMDIGLEDNIKIVEMDVCESKGNSRSSSIPGHHEQSDHRFSTHYSTNGSHSKEENYKVSPAPSALTEFSPGACSGHFEDCFSTAQSSPQYHSAMSRVDDSKHPFAFPRPAYAESMSYDYPLFPNYMANTESSRAKVRSQSAPKQRPDSFERQPSRRRVSVEGRNVPRPVRMQRSSSHVGATAQNYQYPWSIKLDRSTVSLKDSECGSTSTVLTNTNYCRSLVAYNPNGDRY* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02874 460 SMART iq_5 138 160 IPR000048 GO:0005515
Rops6g02874 460 SMART iq_5 161 182 IPR000048 GO:0005515
Rops6g02874 460 MobiDBLite consensus disorder prediction 359 407 - -
Rops6g02874 460 MobiDBLite consensus disorder prediction 27 47 - -
Rops6g02874 460 MobiDBLite consensus disorder prediction 377 392 - -
Rops6g02874 460 Pfam IQ calmodulin-binding motif 142 158 IPR000048 GO:0005515
Rops6g02874 460 Pfam IQ calmodulin-binding motif 166 182 IPR000048 GO:0005515
Rops6g02874 460 MobiDBLite consensus disorder prediction 10 26 - -
Rops6g02874 460 Gene3D - 137 186 - -
Rops6g02874 460 MobiDBLite consensus disorder prediction 270 285 - -
Rops6g02874 460 Pfam Protein of unknown function (DUF4005) 332 392 IPR025064 -
Rops6g02874 460 ProSiteProfiles IQ motif profile. 163 190 IPR000048 GO:0005515
Rops6g02874 460 MobiDBLite consensus disorder prediction 250 285 - -
Rops6g02874 460 MobiDBLite consensus disorder prediction 359 376 - -
Rops6g02874 460 PANTHER IQ-DOMAIN 5-RELATED 1 390 - -
Rops6g02874 460 ProSiteProfiles IQ motif profile. 139 167 IPR000048 GO:0005515
Rops6g02874 460 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02874 Rops-Chr6 51330020 51332377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02874 1 448 IQD Protein Family AT4G14750 46.383 1.15e-103 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02874 - - gmx:100817667 681.789