Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02873 ATGGCTGGTAGAATACCTGGTGTTTGGTTGCCCAGAAGGAAGAGCTCAGAACACCACCATAAATATGAACATCACCCTACCTACCTAAGAGAATCATTGGAGGAGGAACCATGGATTCATTCAGTGAATGCCTTAGATGAAACTGCTTTCAAGGCCAGGCAACGGCTTCAAAAGAAGCTTGGACACTTCTTTTCCTCTTCCAGGTCAAGTGATAATCCTAAAAAAGAAGGAAAAGTAAGTGAAGGGACTTTTGAGAAGAAGGATGCAGGTGGGAAGTTACTAGGAAGAAGTTCATGGTTATTATTGCGTCCAAACAAGTTTAAGAAAGAGAGGAAAGTTTGTGCTGTTTGCTTAGAAGATTTTGAGCAAGACCAGCAGGTTATGAACCTTTCTTGCTCCCATAAGTACCATTCAGCATGTCTTCTCCCATGGCTTGAAGCTCATCCACATTGTCCCTATTGTAGAACCATAGTTGAGCCTTCATATACTTGTTTGAAGGGCATGCCAAGGCATTGGCTTTTGTGTTGTTTGTAA 534 0.4213 MAGRIPGVWLPRRKSSEHHHKYEHHPTYLRESLEEEPWIHSVNALDETAFKARQRLQKKLGHFFSSSRSSDNPKKEGKVSEGTFEKKDAGGKLLGRSSWLLLRPNKFKKERKVCAVCLEDFEQDQQVMNLSCSHKYHSACLLPWLEAHPHCPYCRTIVEPSYTCLKGMPRHWLLCCL* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02873 177 SMART ring_2 114 154 IPR001841 -
Rops6g02873 177 SUPERFAMILY RING/U-box 113 161 - -
Rops6g02873 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 162 IPR013083 -
Rops6g02873 177 Pfam Ring finger domain 113 155 IPR001841 -
Rops6g02873 177 ProSiteProfiles Zinc finger RING-type profile. 114 155 IPR001841 -
Rops6g02873 177 MobiDBLite consensus disorder prediction 69 83 - -
Rops6g02873 177 CDD RING-H2_PA-TM-RING 113 155 - -
Rops6g02873 177 PANTHER SI:CH211-59O9.10 110 160 - -
Rops6g02873 177 MobiDBLite consensus disorder prediction 64 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02873 Rops-Chr6 51310634 51312062 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02873 108 158 C3H Transcription Factor Family AT3G58720 43.137 2.01e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02873 - - gmx:100527548 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02873 6 51310634 51312062 Rops6g02873 6 51310634 51312062 ECH