Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02844 ATGCAGCTTCTTCACTCCGATGAAACCGTTCCCGAAACTCGCGACTTTCCCGAGAAACCCGAAGAGAAGAAGAAGACCCAAAGCGATTCTTCTTCGGACCCTGGAATCGATGAAGGTGCGGCTCTCGACGTTACCGGAAAGAGCTTGGAGTTTCCGGCGCCGGAGAATGCCGAAGATTCGGTTGAAAGTTTGTACATGTACAAGAATGTTTACAGTTTGATTCCAAAGTCGGTGGGTAACCTGGTGCGTTTGAAAACGTTGAAGTTTTTCGGAAACGAGATTAACTTGTTCGCACCAGAGTTTGGGAACATGACGGGGTTGGAACGGTTACAGATGAAGATATCTTCACCAGGGATTGGTGGGTTGCAATTTCACAAGTTGAAGGGTTTGAAGGAGCTCGAGCTTTCAAAAGGACCTCCAAGACCTTCTGCTTTTCCCATTTTGACTGAAATTGCTGCACTTAAGTGCTTGACCAAACTTTCCATTTGTCACTTCTCCATAAGATACCTTCCTTCGGAAATCGGATGCTTAAAGAATTTGGAGTATCTTGATCTTTCATTCAATAAAATGAAGACATTGCCGGCAGAGATTAGTTATTTGAATGGCTTGATATCCATGAAAGTTGCGAATAATAAGTTGGTGGAACTACCGTCATCGATGACTTCTCTCTCAAGGTTGGAGAGTTTGGACTTGTCGAATAATAGGTTGACTTCATTAGGACCACTTGAACTTGGCTCAATGCATAGACTTCAGAACTTGAATCTTCAGTGTTTGACATGGAGGGACCGCATTGAAGGTGCCTCTGTGCATCCAAGGTATTTATTTAGTAGCTGTAGCTTGCCTTACAACAAGCTGCCCAGCATTTTTCAAATTCCTTCATGGATATGCTGTAATATGGAAGGAAATGATGGAGGTAGATGCAAAGACAATTGTAGCTGTTCTTCTGTTGAAATGGATGTCTATGAAAGCAGTTTCCAGGAAAATGATGAAACCCTTTGTCATGGTTCTCATAACACCTCATCAGGCATATTAATGGGCTCCTCATCTAGCAGATGTTTTGCAGCCAGGAAGTCAGGTAAACGGTGGAAGCGGCGGCACTATTTTCAGCAGAAAGCTCGTCAAGAACGCTTGAACAACAGCAGAAAGTGGAAAGGTGTAGGTGATGACCAGTTGTCAAGCAAGAAGATTCACAGAATTTCTGAACCAGGAAATCTGGACAGTCTCACCTCTAAAAGTTGCACAGAAACTGTATCAGACAATGGGAGCCTGGATGATAACAATAAAAGAATATTCCCTGAAGATGCAGTAAATGAGAATTTAATTGATAATGTTAACAATGATGAGGTAATTATTGAAAAGCAGTTTTCTCGAGAAGATTGCTGCGCTGCTGAAAGTAAAGATGAAAAAGACACATTGTTATGCTCCTTAGAGAATGAGCAAGGTGAACAGGATGAAGCATCTTGTTCAGATCTTTTAAAGTGCACTTCTAAATCAAAGAGGCCTTCAGATCGTGATCTTGATAATCCTAAACCATGCAAATCTAGAAAACCGATTGGTGATAGCTCATTACTGTCTTGCAAGTACAGTGAGATCTCATTTTGTGGCATTGAGGACCATCTATCAGATGGCTTTTATGATGCTGGACGTGATCAGCCTTTCATGCCTCTTGAGAGTTATGAGCAAAATCAGTGTCTTGCTTCTCGTGAAGTCATCCTGTTAGACAGAAAAAGGGATGAAGAGTTGGATGCTGTTATGCTCTCTGCTCGGGCATTGGTCTATAATTTGAAGCAGTTAAATGGTTTAAACAGACCTGCGAGCCAGGCCGTGGTTGATAACTTGCGGACAGCATCACTGCTTGCGCTCTTTGTATCTGATCATTTTGGTGGAAGTGATAGAAGTGGTATTATAGAAAGGACACGGAAATCTGCGTCTGGTTCAAACTATAATAAGCCTTTTGTCTGTACATGCTCAGCTGGAAGCAGCACCAGCATAAGTACATCCACTGAACTAGTTGTAAACACCATTGAAGATACCTCTCTTTCTAAGATTTCTGAAAAATCTCTTGATTCTATAAAAAAAAGGCGAAATTCAATCATAGTTCCAATTGGCTCTGTGCAGTATGGTGTATGTAGACATAGGGCTCTGCTTTTTAAGTATTTATGTGATCACCTGGAACCACCTGTACCTTGTGAGCTTGTTAGGGGTTACCTGGATTTTTTACCACATGCCTGGAATGTCATCCTGATAAAGAGGGGAGCTGGATGGGTTCGAATGCTTGTAGATGCTTGTCGACCTCACGATATAAGAGAAGAGAAAAATCCTGAGTACTTTTGCAGGTACATACCTCTTAGTCGAACCGAAATCCCTCTTTCATCTAGTAATGATCCTGGTCCTGATTATTCCTTTCCATCTCTCTCTACTTGTGATGAACTTGAGAAAAAAGCTTTGACTACCTTAGTTCAGTGCAAATTGGGATCAGTTGAGGCTGTGGCAAAGGTGCGTACGTTGGAAGTGCAGGGGAGTTCAGCGGACGAAATTAAAAAATTTGAATATAATTGTTTGGGAGAAATTAGAATTCTTGGTTCTTTAAAACACCCGTGCATAGTGGAAATGTATGGGCACCAAATATCTTGCAAATGGACTATCTCAGCTGATGGTAGTCCTGAGCACCGTGTATTAAGATCTGCAATTTTTATGGAGTATGTGGAAGGGGGCTCCTTAAAAAACTATCTAGAGAAGCTGTCGGAAGCTGGTGAAAAGCATGTTCCTGTAGAGTTGGCTTTGTATATTGCCAAAGATGTGTCGTGTGCTTTGTCGGAGCTGCACTCAAAGCACATAATTCATCGTGACATAAAAAGTGAAAACATTCTTGTTGATTTTGATAGGAAGAGAGGTGATGGAACTCCCACTGTGAAGCTCTGTGATTTTGATAGTGCAGTGCCACTAAGATCACATTTACATGCATGCTGTATTGCTCATGCGGGAACACCTCCTCCTTGTGTGTGTGTTGGAACACCTCGTTGGATGGCTCCAGAGGTTATGCGAACTATGTATGAAAAAAACACTTACGGATTGGAAGCTGATATTTGGTCATTTGGTTGTTTACTTCTGGAGATGCTGACTCTTCAAATTCCATATTCTGGAGTACCTGATTCACAAGTCCATGATAGTTTGCAGATGAGTAAACCACCACAATTAACTGATGAGCTGGAGGTACTGATTTCAATGAATGAACCCACAATGATTCAATCTGGTGAAGAGCTGGAAAAATCAGATGCTGAGATAGGCACTTTGAAGTTTCTGGTTGATTTGTTTCATAGGTGTGTGGAAGGAAATCCAAATGAACGACCTACAGCTGAAGAAATCCATGAAATACTGCTCGGACACACAGGCCGTCTACAAGTTCAAGATGTGGGGAAGATTTAG 3426 0.4183 MQLLHSDETVPETRDFPEKPEEKKKTQSDSSSDPGIDEGAALDVTGKSLEFPAPENAEDSVESLYMYKNVYSLIPKSVGNLVRLKTLKFFGNEINLFAPEFGNMTGLERLQMKISSPGIGGLQFHKLKGLKELELSKGPPRPSAFPILTEIAALKCLTKLSICHFSIRYLPSEIGCLKNLEYLDLSFNKMKTLPAEISYLNGLISMKVANNKLVELPSSMTSLSRLESLDLSNNRLTSLGPLELGSMHRLQNLNLQCLTWRDRIEGASVHPRYLFSSCSLPYNKLPSIFQIPSWICCNMEGNDGGRCKDNCSCSSVEMDVYESSFQENDETLCHGSHNTSSGILMGSSSSRCFAARKSGKRWKRRHYFQQKARQERLNNSRKWKGVGDDQLSSKKIHRISEPGNLDSLTSKSCTETVSDNGSLDDNNKRIFPEDAVNENLIDNVNNDEVIIEKQFSREDCCAAESKDEKDTLLCSLENEQGEQDEASCSDLLKCTSKSKRPSDRDLDNPKPCKSRKPIGDSSLLSCKYSEISFCGIEDHLSDGFYDAGRDQPFMPLESYEQNQCLASREVILLDRKRDEELDAVMLSARALVYNLKQLNGLNRPASQAVVDNLRTASLLALFVSDHFGGSDRSGIIERTRKSASGSNYNKPFVCTCSAGSSTSISTSTELVVNTIEDTSLSKISEKSLDSIKKRRNSIIVPIGSVQYGVCRHRALLFKYLCDHLEPPVPCELVRGYLDFLPHAWNVILIKRGAGWVRMLVDACRPHDIREEKNPEYFCRYIPLSRTEIPLSSSNDPGPDYSFPSLSTCDELEKKALTTLVQCKLGSVEAVAKVRTLEVQGSSADEIKKFEYNCLGEIRILGSLKHPCIVEMYGHQISCKWTISADGSPEHRVLRSAIFMEYVEGGSLKNYLEKLSEAGEKHVPVELALYIAKDVSCALSELHSKHIIHRDIKSENILVDFDRKRGDGTPTVKLCDFDSAVPLRSHLHACCIAHAGTPPPCVCVGTPRWMAPEVMRTMYEKNTYGLEADIWSFGCLLLEMLTLQIPYSGVPDSQVHDSLQMSKPPQLTDELEVLISMNEPTMIQSGEELEKSDAEIGTLKFLVDLFHRCVEGNPNERPTAEEIHEILLGHTGRLQVQDVGKI* 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02844 1141 PRINTS Leucine-rich repeat signature 180 193 - -
Rops6g02844 1141 PRINTS Leucine-rich repeat signature 223 236 - -
Rops6g02844 1141 SMART LRR_sd22_2 177 202 - -
Rops6g02844 1141 SMART LRR_sd22_2 223 244 - -
Rops6g02844 1141 Pfam Protein kinase domain 845 1123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02844 1141 SUPERFAMILY Protein kinase-like (PK-like) 847 1126 IPR011009 -
Rops6g02844 1141 SUPERFAMILY Cysteine proteinases 706 764 IPR038765 -
Rops6g02844 1141 ProSiteProfiles Leucine-rich repeat profile. 179 200 IPR001611 GO:0005515
Rops6g02844 1141 SMART serkin_6 809 1127 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02844 1141 SMART LRR_typ_2 223 246 IPR003591 -
Rops6g02844 1141 SMART LRR_typ_2 177 200 IPR003591 -
Rops6g02844 1141 SMART LRR_typ_2 81 103 IPR003591 -
Rops6g02844 1141 Pfam Ethylene-responsive protein kinase Le-CTR1 675 752 - -
Rops6g02844 1141 Gene3D Ribonuclease Inhibitor 42 291 IPR032675 -
Rops6g02844 1141 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 107 1127 - -
Rops6g02844 1141 ProSitePatterns Serine/Threonine protein kinases active-site signature. 946 958 IPR008271 GO:0004672|GO:0006468
Rops6g02844 1141 Gene3D Transferase(Phosphotransferase) domain 1 806 1136 - -
Rops6g02844 1141 SMART LRR_bac_2 200 219 - -
Rops6g02844 1141 SMART LRR_bac_2 177 196 - -
Rops6g02844 1141 SMART LRR_bac_2 223 242 - -
Rops6g02844 1141 MobiDBLite consensus disorder prediction 8 31 - -
Rops6g02844 1141 FunFam Leucine-rich repeat protein kinase family protein 851 1132 - -
Rops6g02844 1141 SUPERFAMILY RNI-like 61 262 - -
Rops6g02844 1141 ProSiteProfiles Leucine-rich repeat profile. 225 246 IPR001611 GO:0005515
Rops6g02844 1141 ProSiteProfiles Protein kinase domain profile. 805 1126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02844 1141 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02844 Rops-Chr6 51031204 51039340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02844 825 1122 MAP Kinase Kinase Kinase AT4G08500 33.333 1.33e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Rops6g02844 Pkinase 5.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02844 - - gmx:100819959 1817.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02844 6 51031204 51039340 Rops6g02844 6 51031204 51039340 ECH