Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02843 ATGCCAGTGAGGCAGATGAAAGAAAGCTCAGAGCAACACCTTGTGATCAAAACCCATTTGCAGAACCCCATGAATCAAGCTAAGAAGGCACCAAAAGCTGTCCAAAATGGCAAAGGTCGTCCACCACTAGAAAATGATAACCAATCTTCACCTCACCCAAGGAACAAGGGAAGAAGAAGGGGAAGAGGTGGCAGAAAATCTGATCAAGGAGATGTTTTGATGAGACCTAGTTGTAGGCCATGCACTGTAACAAGTATTGCAAATAAAAAAGTTGAAAATGGCCACATCAATGGTGACATAGATGTTGGTTTTCCTACTTCAAGCAAGTCTTTGAGCTTTGCTCGCAGACCTGGTTATGGACAAGTTGGGACAAAATGCATTGTGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCAATATGATGTTACTATTACCCCGGAGGTGTCTTCTAGAACAGTAAATAGGTCGATCATAGCTGAACTTGTGAGGCTGTATAAAGAGTCTGACTTAGGGATGAGACTTCCTGCATATGATGGCAGAAAAAGTCTTTACACTGCAGGGCAGCTTCCCTTTGCTTGGAGAGAGTTTAAGATTAAGCTCATAGATGAAGAGGATGGAGTTAATGGCCCCAAAAGGGAAAGAGAATACAAGGTGGTGATCAAGTTTGCTGCTCGGGCAAACTTGCATCATTTGGGCCAGTTTCTTGCTGGTAAGCGTGCTGATGCACCCCAGGAGGCACTTCAAATTCTTGACATTGTACTAAGAGAACTATCAACTAAGAGGTATTGCCCCATTGGGAGGTCCTTCTTTTCACCTGATATTAGAAGACCACAACGGCTTGGAGAGGGATTGGAGTCATGGTGTGGATTTTACCAAAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATTGATATGGCATCTGCTGCATTCATTGAACCTCTTCCAGTAGTAGAGTTTGTTGGCCAGTTATTAGGAAAAGACGTGTTGTCAAGGCCATTATCAGATGCTGATCGCATTAAGATCAAGAAAGCCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGAACTGTAAGAAGAAAATATCGTGTTTCAGGGTTGACTACTCAACCAACAAGAGAACTTGTGTTTCCCGTTGATGAGAATTCAACTATGAAGTCAGTAGTTGAATATTTTCAAGAGATGTATGGTTTCACTATTCAATATACTCACCTTCCTTGCCTTCAAGTAGGAAACCAAAAGAAGGCTAACTATTTACCTATGGAGGCCTGCAAAATTGTTGAGGGGCAACGCTATACAAAAAGATTGAATGAGAAGCAAATTACTGCTCTATTGAAAGTTACTTGCCAGAGACCTCGTGATCGGGAAAATGACATTTTACGGACCATTCAACATAATGCTTATAACCAAGATCCTTATGCAAAGGAATTTGGAATTAAAATCAGTGAAAAGCTAGCTTCTGTTGAAGCACGAATTCTTCCTGCCCCTTGGCTTAAATATCACGAGAGTGGGAAAGAAAAGAACTGCTTACCCCAAGTTGGTCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAGCCGATGGGCATGCATAAATTTCTCACGGAGTGTGCAAGATAGCGTTGCGCGCACTTTTTGTAATGAGCTTGCTCAAATGTGTCAAGTATCTGGAATGGAATTTAATCCAGAGCCTGTTATCCCCATCTACAACGCCAAGCCTGAGCAAGTGGAAAAAGCTTTGAAGCATGTTTACCATGTGTCATCAAACAAAACTAAAGGAAAGGAATTGGAGCTTTTGTTAGCAATATTGCCAGACAATAATGGGTCTCTCTATGGTGATCTCAAGCGTATTTGTGAAACTGACCTTGGTTTAATTTCACAATGCTGTCTGACAAAGCATGTCTTTAAAATCACTAAACAGTACTTGGCTAATGTGTCTCTGAAGATCAATGTTAAGATGGGAGGTAGAAACACTGTTCTTCTTGATGCTGTAAGCTGCAGAATACCATTGGTTAGCGACATACCAACCATAATTTTTGGAGCAGATGTTACCCATCCTGAAAATGGAGAAGACTCTAGCCCCTCAATAGCAGCTGTGGTAGCCTCCCAGGACTGGCCTGAAGTGACAAAATATGCCGGTTTAGTGTGTGCTCAAGCTCATAGACAGGAACTTATACAAGATTTGTACAAAACTTGGCATGACCCTGTTCGTGGCACAGTTAGTGGTGGCATGATACGAGATTTACTGGTTTCCTTTAGAAAGGCAACGGGACAAAAGCCACTACGAATTATATTTTACAGGGATGGTGTAAGTGAAGGGCAATTTTACCAAGTGTTACTTTATGAATTGGACGCAATCCGGAAGGCATGTGCTTCCTTAGAACCAAATTATCAGCCTCCAGTAACTTTCATAGTTGTACAAAAAAGACATCATACTCGGTTATTCGCAAATAACCATAGGGACAGGAGCAGTACAGATAAGAGTGGGAATATATTGCCTGGGACTGTTGTTGATTCTAAAATCTGCCATCCAACAGAATTTGATTTTTATCTCTGCAGTCATGCTGGCATCCAGGGTACTAGTCGGCCAGCTCATTATCATGTTCTATGGGATGAAAACAACTTTACAGCAGATGGAATTCAGTCTTTGACAAACAATCTTTGCTATACATATGCCAGGTGTACACGCTCCGTATCTGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCCTTTCGAGCTCGTTTCTATATGGAACCAGACATGCAAGAGAATGGCTCTACAGGTGATAGTAATGGTAGTCATAGTTCCAAGGGAACACGAGCAGCTGGAGAGTGTGGTGTCAAGCCATTGCCCGCCTTGAAAGAAAATGTGAAGAGAGTAATGTTTTACTGTTAG 2931 0.4183 MPVRQMKESSEQHLVIKTHLQNPMNQAKKAPKAVQNGKGRPPLENDNQSSPHPRNKGRRRGRGGRKSDQGDVLMRPSCRPCTVTSIANKKVENGHINGDIDVGFPTSSKSLSFARRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSRTVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGQLPFAWREFKIKLIDEEDGVNGPKREREYKVVIKFAARANLHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPDIRRPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRPLSDADRIKIKKALRGVKVEVTHRGTVRRKYRVSGLTTQPTRELVFPVDENSTMKSVVEYFQEMYGFTIQYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTIQHNAYNQDPYAKEFGIKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDSVARTFCNELAQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSSNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSTGDSNGSHSSKGTRAAGECGVKPLPALKENVKRVMFYC* 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02843 976 Pfam N-terminal domain of argonaute 125 259 IPR032474 -
Rops6g02843 976 Gene3D paz domain 314 439 - -
Rops6g02843 976 MobiDBLite consensus disorder prediction 935 950 - -
Rops6g02843 976 MobiDBLite consensus disorder prediction 934 954 - -
Rops6g02843 976 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 105 931 - -
Rops6g02843 976 SUPERFAMILY PAZ domain 315 476 IPR036085 GO:0005515
Rops6g02843 976 Gene3D - 499 672 - -
Rops6g02843 976 SMART PAZ_2_a_3 325 457 IPR003100 GO:0005515
Rops6g02843 976 SMART DUF1785_2 268 320 IPR014811 -
Rops6g02843 976 MobiDBLite consensus disorder prediction 1 77 - -
Rops6g02843 976 FunFam protein argonaute 10-like 678 976 - -
Rops6g02843 976 Pfam Argonaute linker 1 domain 269 318 IPR014811 -
Rops6g02843 976 Pfam PAZ domain 347 451 IPR003100 GO:0005515
Rops6g02843 976 CDD Piwi_ago-like 479 929 IPR045246 -
Rops6g02843 976 SMART Piwi_a_2 609 930 IPR003165 GO:0003676
Rops6g02843 976 FunFam Argonaute 10 499 672 - -
Rops6g02843 976 Pfam Mid domain of argonaute 518 595 IPR032473 -
Rops6g02843 976 Gene3D - 678 976 IPR036397 GO:0003676
Rops6g02843 976 MobiDBLite consensus disorder prediction 15 29 - -
Rops6g02843 976 ProSiteProfiles PAZ domain profile. 321 435 IPR003100 GO:0005515
Rops6g02843 976 FunFam Protein argonaute-2 314 440 - -
Rops6g02843 976 CDD PAZ_argonaute_like 320 434 - -
Rops6g02843 976 Pfam Argonaute linker 2 domain 461 507 IPR032472 -
Rops6g02843 976 Pfam Piwi domain 610 929 IPR003165 GO:0003676
Rops6g02843 976 SUPERFAMILY Ribonuclease H-like 601 931 IPR012337 -
Rops6g02843 976 ProSiteProfiles Piwi domain profile. 609 930 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02843 Rops-Chr6 51001354 51009948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02843 1 976 Eukaryotic Initiation Factors Gene Family AT5G43810 81.618 0.0 1672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02843 K11593 - gmx:100816999 1861.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02310 1 45319008 45321468 Rops6g02843 6 51001354 51009948 PCT