Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02831 ATGCCTTCTCTCCCTCTCTCTGATACTGAAACCACACCCAAACATAAGAAGGACAAGACCAAGAAAACCAAGAACCATTCCTTGACTAAACCCGAAGAATCCATCATTGCCAAGAATAGCAAGAAAAGCTCCAAACTTGTTAATCCCCCCGATCCCGATCAGGATGGGGTTTCGGGGAAGAAGAAGAAGAAGCGCAAGGCATCACATTTAGAGGCAATGACGACCCGCAATGGGGAGGAGGACATTAGTTCTGAGTTGGTCGAACCAGAAGGTTCTAGAGAGGACAAGAAGGCCAAGAAGAAGAAGAAGAAGGCCAAGTTGGAAGAACCTCTACTAATGGAAGAAGAGGAAGAGGAAGGGGTTGAGAAGAAGGAGGATCCCAATGCGGTTTCCAAATTTAGAATATCGGAGCCGTTGAGGACAAAGTTGAAGGAAAAGGGAATCGAATCACTGTTTCCAATTCAAGCCATGACTTTCGATACCATTCTTGATGGTTCTGATTTGGTTGGTCGGGCTCGAACTGGTCAGGGTAAAACTCTGGCCTTTGTGTTGCCCATATTAGAGTCTTTAACAAATGGTCCAGCAAAAGCATCAAGAAAGACTGGGTATGGGAGGCCTCCCGGCGTTCTTGTGCTTTTACCTACTAGGGAATTGGCCTGTCAGGTGCATGCTGATTTTGAAGTTTATGGTGGGGCAATGGGATTGACGTCTTGTTGTTTATATGGAGGAGCTCCATATCAAAGTCAAGAAATTAAGCTTAAGAGAGGCGTTGATGTTGTTATCGGCACACCAGGCCGCATAAAGGATCATATAGAGAGGGAAAATATTGACCTGAGCCAACTAAAATTTCGGGTCCTAGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTGATTCTTGGTAAAGTAGAAAATGTCAGTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTGCTGCAAAATTTCTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGAAGTACAAAAATGAAGGCTAGCACCAATGTTAGGCATATTGTTCTTCCTTGTACTAGTTCTGCCAGGTCCCAGCTTATCCCAGACATTATTCGCTGTTACAGCAGTGGTGGCCGGACAATTATATTTACTGAGACAAAGGAGTCTGCTTCTCAGCTTGCAGGGTTGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATACAGCAGGCGCAACGTGAGGTTACGTTGTCTGGCTTCAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCCGCTCGAGGTCTTGATATTAATGATGTTCAATTAATTATCCAGTGTGAACCCCCTCGGGATGTAGAAGCCTATATCCATCGTTCTGGGCGCACAGGAAGAGCAGGTAATTCTGGAGTTGCTGTTATGCTTTATGATCCAAGAAGGTCAAATATATCTAAAATAGAAAGAGAATCGGGTGTAAAATTTGAACATGTATCTGCGCCTCAGCCGGATGATATTGCCAAGGCTGTTGGTGGGGAAGCGGCTGAAATGATTACCCAAGTGTCTGATAGTGTGATTCCTGCATTTAAGTCTGCTGCTGAGGAACTTTTGAACAACTCTAGTTTATCAGTAGTTGAATTACTTGCAAAGGCTCTTGCCAAGGCTGTTGGTTTTACCGAGATAAAGAAAAGATCACTTCTCACTTCCATGGAGAACTACGTTACATTACTCCTTGAGATTGGGAAACCTATCTTCACTCCATCTTTTGCGTACGGAGTCTTGAGGAGATTCTTGCCTGAAGAGAAGGTTGAAGCTGTGAAAGGTCTTACTCTTACTGCAGATGGAAATGGTGTTGTTTTTGATGTACCAGCTGAAGATTTAGATACATATCTTGCTGGTCAGGAAAATTCCTCGGATGTAAGTTTAGAGGTGTTAAAAGCATTGCCGCGATTGCAACAGAGAGATCAATCAAGAGGGGGCAGATTTGGTGATGGTGGTGGTAGAGGAGGTGGGTTTGGTGATAGAAGTGGGGGGAACAGGTTTTCAGGTGGCAGGGGTAGTGGCCGGAACGGTAGATTTTCCAATGATAGGTTTTCAAATGGTGGTGGGAGAGGCCGTGGCAACTGGGGTGGAAAAAGATGGTGA 2160 0.4472 MPSLPLSDTETTPKHKKDKTKKTKNHSLTKPEESIIAKNSKKSSKLVNPPDPDQDGVSGKKKKKRKASHLEAMTTRNGEEDISSELVEPEGSREDKKAKKKKKKAKLEEPLLMEEEEEEGVEKKEDPNAVSKFRISEPLRTKLKEKGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKASRKTGYGRPPGVLVLLPTRELACQVHADFEVYGGAMGLTSCCLYGGAPYQSQEIKLKRGVDVVIGTPGRIKDHIERENIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVENVSKVQTLLFSATLPDWVKHIAAKFLKPDKKTADLVGSTKMKASTNVRHIVLPCTSSARSQLIPDIIRCYSSGGRTIIFTETKESASQLAGLLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNSGVAVMLYDPRRSNISKIERESGVKFEHVSAPQPDDIAKAVGGEAAEMITQVSDSVIPAFKSAAEELLNNSSLSVVELLAKALAKAVGFTEIKKRSLLTSMENYVTLLLEIGKPIFTPSFAYGVLRRFLPEEKVEAVKGLTLTADGNGVVFDVPAEDLDTYLAGQENSSDVSLEVLKALPRLQQRDQSRGGRFGDGGGRGGGFGDRSGGNRFSGGRGSGRNGRFSNDRFSNGGGRGRGNWGGKRW* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02831 719 Gene3D - 580 651 - -
Rops6g02831 719 Gene3D - 353 579 IPR027417 -
Rops6g02831 719 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 341 IPR014001 -
Rops6g02831 719 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 285 293 IPR000629 -
Rops6g02831 719 MobiDBLite consensus disorder prediction 25 39 - -
Rops6g02831 719 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 95 542 - -
Rops6g02831 719 FunFam DEAD-box ATP-dependent RNA helicase 7 579 651 - -
Rops6g02831 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 485 IPR027417 -
Rops6g02831 719 SUPERFAMILY RNA-binding domain, RBD 566 649 IPR035979 GO:0003676
Rops6g02831 719 MobiDBLite consensus disorder prediction 70 96 - -
Rops6g02831 719 MobiDBLite consensus disorder prediction 1 105 - -
Rops6g02831 719 Pfam DEAD/DEAH box helicase 152 329 IPR011545 GO:0003676|GO:0005524
Rops6g02831 719 CDD DEADc 139 336 - -
Rops6g02831 719 SMART ultradead3 147 359 IPR014001 -
Rops6g02831 719 MobiDBLite consensus disorder prediction 660 719 - -
Rops6g02831 719 CDD SF2_C_DEAD 356 482 - -
Rops6g02831 719 CDD GUCT_RH7_like 569 654 - -
Rops6g02831 719 Pfam Helicase conserved C-terminal domain 375 473 IPR001650 -
Rops6g02831 719 SMART helicmild6 396 473 IPR001650 -
Rops6g02831 719 Pfam GUCT (NUC152) domain 562 657 IPR012562 GO:0003723|GO:0004386|GO:0005524
Rops6g02831 719 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 512 IPR001650 -
Rops6g02831 719 Gene3D - 76 341 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02831 Rops-Chr6 50809619 50814746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02831 90 479 Eukaryotic Initiation Factors Gene Family AT1G72730 29.695 2.64e-40 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02831 K16911 - gmx:100820207 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02831 6 50809619 50814746 Rops6g02831 6 50809619 50814746 ECH