Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02823 ATGTTTTCTTTACAACAAGACAATGAGCTGGCGATCCCGTTTCCTGATAGTCTCCACCACCGGCAACACAAAATCTCCGAAGATCTGATTCGGGATGATTATGATTCTGTGGTTGTTGATTATTCTGATAAAAAATTGGGTAGTAGCCAGCCGAAGAAATTATTTTATGGGGCTGATACCACTCATGCTAATTCTAACGAATATAACAAGAAGACGGTTCATAGAGAGATTGAGAAACAAAGGAGGCAAGAAATGGCTACCCTTCATGCCTCACTTAGATCCCTTCTCCCTCTTGAGTTCATCAAGGGAAAGCGTTCGTTGTCTGATCAAATGAACGAGGCAGTGAATTACATAAATCACCTGCAGAAGAATATCAAAGAAATGAGTGAAAAGAGGGATGAACTGAAGAAACTCTCCAATCCCACCAGGCTCGAAAGCCATGCATCTAGCAGTTTCACTTTCCATCAAAGTAACGGAACTGTGGGAATTGAAATCACTAGTGGATTCAGAGAGGAAGGACTCCCACTTTCTAAATTGCTGGAACTACTGATAAAAGAGGGACTTGAAGTTGTTAGTTGCCTTTCAACCAAAGTCAATGGCAGATTACTCCACAGTGTGCAGTGTGAGGTTAACAATTCCGACAGTGTAGATCTATCAGAGCTGAGAAGGAAATTTTCTAATGTGATTCCATCATTTAGATGTTCTGATTAA 711 0.4079 MFSLQQDNELAIPFPDSLHHRQHKISEDLIRDDYDSVVVDYSDKKLGSSQPKKLFYGADTTHANSNEYNKKTVHREIEKQRRQEMATLHASLRSLLPLEFIKGKRSLSDQMNEAVNYINHLQKNIKEMSEKRDELKKLSNPTRLESHASSSFTFHQSNGTVGIEITSGFREEGLPLSKLLELLIKEGLEVVSCLSTKVNGRLLHSVQCEVNNSDSVDLSELRRKFSNVIPSFRCSD* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02823 236 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 68 227 - -
Rops6g02823 236 Pfam Helix-loop-helix DNA-binding domain 70 122 IPR011598 GO:0046983
Rops6g02823 236 Gene3D - 60 150 IPR036638 GO:0046983
Rops6g02823 236 FunFam Transcription factor bHLH126 61 149 - -
Rops6g02823 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 150 IPR036638 GO:0046983
Rops6g02823 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 121 IPR011598 GO:0046983
Rops6g02823 236 CDD bHLH_AtORG2_like 70 146 - -
Rops6g02823 236 Coils Coil 111 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02823 Rops-Chr6 50660324 50661967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02823 60 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 44.505 6.90e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops6g02823 HLH 7.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02823 - - gmx:100775836 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02823 6 50660324 50661967 Rops6g02823 6 50660324 50661967 ECH
Rops5g00774 5 14449163 14450125 Rops6g02823 6 50660324 50661967 PCT