Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02812 ATGCATGACCCTAAAGTCCCAGCTCGTATTTTGAGGATGTTCTTCCATGACTGTTTCATAAGGGGATGTGATGCATCAATATTGCTGGACTCAACTGCCACTAACCAAGCAGAGAAAGATGGCCCTCCTAATATCTCAGTTCGATCCTTCTATGTGATTGATGATGCTAAAGCAAAGCTTGAGTGGGCTTGCCCACACACTGTTTCTTGTGCTGATATAATTGCTATTGCAGCTAGAGATGTAGTAGCCATGTCTGGAGGTCCATATTGGAATGTACTAAAAGGAAGGAAAGATGGGAAGGTGTCAAAGGCATCTGATACTGTCAACTTACCTGCTCCAACCTTCAGTGTGAGCCAACTCATTCAGAGCTTTGCTAAGAGAGGGTTGGGAGTTAAAGATATGGTAACTTTATCTGGAGGTCACACACTAGGCTTTTCACATTGTTCTTCCTTTGTGGCTCGTATTCATAATTTTAGTTCATTGCATGCCATTGATCCAAGAATGAACACTGAGTTTGCACTAGACCTAAGGAAGAAATGTCCAAAACCAAAAAATAATGGTGACGCAGGACAATTCCTGGACTCAACAGCATCAGTGTTTGATAATGACTATTACAAACAATTGTTGGCTGGAAAAGGTATGTTTTCTTCGGATCAATCACTTGTTGGTGATTACAGAACTAGATGGATTGTTGAAGCATTTGCAAGAGACCAGAGTTTGTTCTTCAAAGAGTTTGCAACTTCAATGTTGAAGCTTGGAAATGTAAGGGGCTCTGAAAATGGAGAAGTGAGACTTAAGTGCAGGATTGTGAATTGA 816 0.4105 MHDPKVPARILRMFFHDCFIRGCDASILLDSTATNQAEKDGPPNISVRSFYVIDDAKAKLEWACPHTVSCADIIAIAARDVVAMSGGPYWNVLKGRKDGKVSKASDTVNLPAPTFSVSQLIQSFAKRGLGVKDMVTLSGGHTLGFSHCSSFVARIHNFSSLHAIDPRMNTEFALDLRKKCPKPKNNGDAGQFLDSTASVFDNDYYKQLLAGKGMFSSDQSLVGDYRTRWIVEAFARDQSLFFKEFATSMLKLGNVRGSENGEVRLKCRIVN* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02812 271 Gene3D Peroxidase, domain 2 111 252 - -
Rops6g02812 271 PRINTS Haem peroxidase superfamily signature 86 98 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops6g02812 271 PRINTS Haem peroxidase superfamily signature 7 21 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops6g02812 271 PRINTS Haem peroxidase superfamily signature 68 85 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops6g02812 271 PRINTS Haem peroxidase superfamily signature 193 208 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops6g02812 271 PRINTS Haem peroxidase superfamily signature 133 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops6g02812 271 PRINTS Plant peroxidase signature 132 144 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops6g02812 271 PRINTS Plant peroxidase signature 86 101 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops6g02812 271 PRINTS Plant peroxidase signature 247 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops6g02812 271 PRINTS Plant peroxidase signature 191 206 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops6g02812 271 PRINTS Plant peroxidase signature 9 29 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops6g02812 271 PRINTS Plant peroxidase signature 207 224 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops6g02812 271 PRINTS Plant peroxidase signature 67 77 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops6g02812 271 PRINTS Plant peroxidase signature 48 61 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops6g02812 271 Gene3D - 2 271 - -
Rops6g02812 271 Pfam Peroxidase 3 237 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops6g02812 271 SUPERFAMILY Heme-dependent peroxidases 2 271 IPR010255 GO:0004601|GO:0006979|GO:0020037
Rops6g02812 271 ProSiteProfiles Plant heme peroxidase family profile. 1 271 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops6g02812 271 CDD secretory_peroxidase 3 270 IPR033905 GO:0004601|GO:0042744
Rops6g02812 271 FunFam Peroxidase 111 252 - -
Rops6g02812 271 FunFam Peroxidase 21 112 - -
Rops6g02812 271 ProSitePatterns Peroxidases proximal heme-ligand signature. 133 143 IPR019793 -
Rops6g02812 271 PANTHER PEROXIDASE 25-RELATED 2 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02812 Rops-Chr6 50439354 50440638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02812 1 271 Peroxidase AT5G51890 73.529 1.09e-152 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02812 K00430 - gmx:100799516 473.011