Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02811 ATGGATGGCGCATCAAGGAGAACCGACGAAGCTACGGTGGGTGAGTTGGATGAAGACGATGAAGATTTGAAGAAGGAAAATCCCAAGGTAGCCGCCTCCAGGCTCGCTCCTAGCTTATCTACCAAACACGGCGAACTCGATAACGTGGACAACTACAATACAGAGTTGGGGCTAGTAGTGGGTATGCGTGCCTTTTCATTGTCTTTGTTTTCTTCTCTGTGTTTTCTGAGTATCGATTCAACTGTATGTGGAAAAGCTGTTTGGGATTTTGCCAAAGAGAATGGTTTAGATGTTGTGGTGCTGAATCCTTGTACTATGATGGCCCCAATGATTCCACCGAGGCTTTATGCAAGCACACATAACACATGCTTTTGCCTTGTTTCCACCAAAATTATAACAAAGATTATACTAACTTCTTCTGGATTTCTTTCATTTAAGATAAAACTGAATGTGAAACTAGGAAATGCAGAAAAATCTCTCTTCCAATTCTCAATTAGTCTTTCTAATCCTTTGCAGTGCCAGAAAAGCTTCAAAGCACAGTCAACGTATCAAAACTCTGCTTCTCTGTTGTTCCCCGTTTCTTCCCCTCCAAAAAAAACACAGATGGAAGCGAATCCTACCCACGACGGCGATTTCAGCGAAGAAGAAAACGACACCAACAGTGGTGATGTCTCTCCGTCGGAGACGACGGCTACAACGGTGGACCCGCCGGATTCATCGGCGGCGGTTCCACTGAAAGAAGAGCTCACGGAGACGGAGCATAGTGTGGACCAGTCTCCTCCGTTGGGCGTTATTCCGATGCCGTTGACGATGTCAACGCCGGCGGCTGCGAAGAAACAGTCGAAGGACCGTCACACGAAGGTGGAGGGCCGTGGCCGGAGAATCCGAATGCCGGCGACGTGCGCCGCCAGGATCTTCCAGCTGACACGTGAGCTCGGTCACAAGTCCGACGGAGAAACAATCCGGTGGTTGTTGGAACACGCTGAACCGGCGATTATAGAAGCCACCGGCACCGGAACAATCCCGGCCATCGCGGTGTCGGTGGGCGGCACACTAAAGATTCCAACTTCATCGGCGGCGAGGCCGGAAGGAGAAGAGACACCAAGGAAACGAAGGAGGAGAGCATCAAACAGTGAGTTCATTGATATGAATGATAAAGTTTCAGTGTGTTCAGGGCTTGCACCAATTGCACAAACCCCATTTAGTGGTGGTGGTGGTGGTGGTGCAAGTGGCAGTGGTGGTGGATTAGTACCTTTGTGGCCTGTGGGTAGTGGTGGTGGGTCTAATACTACAGGGCCATTTTTTATGTTCCCTAACTCTTCTAACCACCACCCTCAGTATTGGGCCATTCCTGCAACTGCAGCCCCATTTTTCAATGTGCAAGCCAGACCCATTTCAGGTTTTGTTTCTGCTATGCACATGCAACAACAACATGGGGAACATCCTTCTAATGTTGTTGCCTCGGCTTCTGCTAACTCTTCCTCCACTTTGGCTCCTACTTTGAGTTCAGCAAGTACCGCCACTACTACTACTAGTAGTAGTTCCTCTACTTCTACAACCACCACTCATATGCTCAGGGATTTCTCTTTGGAAATTTATGACAAGAAAGAGCTTCAATTTTTGAGTCATTCTGCTGCTAATTCAGAACCACCTCCTACTTCAAAGCCTTGA 1671 0.4829 MDGASRRTDEATVGELDEDDEDLKKENPKVAASRLAPSLSTKHGELDNVDNYNTELGLVVGMRAFSLSLFSSLCFLSIDSTVCGKAVWDFAKENGLDVVVLNPCTMMAPMIPPRLYASTHNTCFCLVSTKIITKIILTSSGFLSFKIKLNVKLGNAEKSLFQFSISLSNPLQCQKSFKAQSTYQNSASLLFPVSSPPKKTQMEANPTHDGDFSEEENDTNSGDVSPSETTATTVDPPDSSAAVPLKEELTETEHSVDQSPPLGVIPMPLTMSTPAAAKKQSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTIPAIAVSVGGTLKIPTSSAARPEGEETPRKRRRRASNSEFIDMNDKVSVCSGLAPIAQTPFSGGGGGGASGSGGGLVPLWPVGSGGGSNTTGPFFMFPNSSNHHPQYWAIPATAAPFFNVQARPISGFVSAMHMQQQHGEHPSNVVASASANSSSTLAPTLSSASTATTTTSSSSSTSTTTTHMLRDFSLEIYDKKELQFLSHSAANSEPPPTSKP* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02811 556 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 236 536 IPR005333 GO:0003700
Rops6g02811 556 MobiDBLite consensus disorder prediction 219 237 - -
Rops6g02811 556 MobiDBLite consensus disorder prediction 496 521 - -
Rops6g02811 556 ProSiteProfiles TCP domain profile. 281 335 IPR017887 -
Rops6g02811 556 MobiDBLite consensus disorder prediction 363 378 - -
Rops6g02811 556 MobiDBLite consensus disorder prediction 278 292 - -
Rops6g02811 556 Gene3D - 75 142 - -
Rops6g02811 556 MobiDBLite consensus disorder prediction 190 292 - -
Rops6g02811 556 MobiDBLite consensus disorder prediction 1 30 - -
Rops6g02811 556 MobiDBLite consensus disorder prediction 355 378 - -
Rops6g02811 556 Pfam TCP family transcription factor 280 360 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02811 Rops-Chr6 50418100 50434916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02811 274 541 TCP Transcription Factor Family AT5G51910 51.812 1.20e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops6g02811 TCP 1.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02811 - - tpra:123922458 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02811 6 50418100 50434916 Rops6g02811 6 50418100 50434916 ECH