Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02802 ATGTTTTCCTTCAATCATTTTTCCGACCCGAATAACTCGGAGGTGTTCCTGGCGGAGAGCCACCCGAAGAAGCGTGCAGGGAGGAAGAAGTTCAGGGAAACACGCCACCCGGTGTACCGGGGAGTGAGGAGAAGAGATTCCGGCAAGTGGGTATGTGAGGTAAGAGAGCCAAACAAGAAGACAAGGATTTGGCTCGGGACATTCCCCACGCCAGAGATGGCGGCGCGTGCACACGACGTGGCGGCGATAGCGCTTAGAGGAAGGTCAGCATGCCTCAACTTCGCCGACTCTGCATGGAGGCTTCCAGTTCCGGCCACGGCGGATGCCAGGGACATACAGAAGGCGGCGGCGGAAGCGGCGGAGGCATTCCGGCCGGTGACGGAGAACGATGAGGTAAGGAAGGATGATGAATCATCGTCTTCGGCGGCAGCGGAGGCGGCGACAGCGACGGAGCAACAGTACGAAGAAGAAGAGGAAGAGGCGGTGCCGGAGTATCTGAAAAACATGGTACTCATGTCACCAACACGTTGTTGGGGAAGTGAGTATGGTGCTGCTGACGTGGAATTTGATGATGCTGAAGTTTCATTGTGGAGTTATTCAATTTAA 606 0.5561 MFSFNHFSDPNNSEVFLAESHPKKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVREPNKKTRIWLGTFPTPEMAARAHDVAAIALRGRSACLNFADSAWRLPVPATADARDIQKAAAEAAEAFRPVTENDEVRKDDESSSSAAAEAATATEQQYEEEEEEAVPEYLKNMVLMSPTRCWGSEYGAADVEFDDAEVSLWSYSI* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02802 201 MobiDBLite consensus disorder prediction 126 161 - -
Rops6g02802 201 MobiDBLite consensus disorder prediction 126 140 - -
Rops6g02802 201 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 199 IPR045277 GO:0003700
Rops6g02802 201 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Rops6g02802 201 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Rops6g02802 201 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Rops6g02802 201 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Rops6g02802 201 FunFam Ethylene-responsive transcription factor 2 37 96 - -
Rops6g02802 201 CDD AP2 39 97 IPR001471 GO:0003700|GO:0006355
Rops6g02802 201 SUPERFAMILY DNA-binding domain 38 97 IPR016177 GO:0003677
Rops6g02802 201 Gene3D AP2/ERF domain 38 96 IPR036955 GO:0003700|GO:0006355
Rops6g02802 201 Coils Coil 140 160 - -
Rops6g02802 201 Pfam AP2 domain 37 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02802 Rops-Chr6 50292576 50293422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02802 17 199 AP2-EREBP Transcription Factor Family AT4G25470 58.333 5.55e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops6g02802 AP2 1.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02802 - K09286 lja:Lj5g3v2028390.1 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00813 5 15400281 15401128 Rops6g02802 6 50292576 50293422 ECH
Rops6g02802 6 50292576 50293422 Rops6g02802 6 50292576 50293422 ECH
Rops5g00813 5 15400281 15401128 Rops6g02802 6 50292576 50293422 PCT