Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02801 ATGGATGATAACCCTTCTTCTGGAAACGTGCCAGTGTCTGGTGCTGCTGACACAGTTGTTTCTTCTACCTCCTTCTCAGCAGCACCAACAACTTCCGGCGAGCATGCGGTGATTCGGTACCGTGGAACCCGTTGCCGGAGTGGGAAATGGGTATCGGAGATAAGGGAGCCACGTAAAACGAAGCGCATTTGGTTAGGAACTTACCCTACGGCGGAAATGGCTGCTGCAGCTTATGATGTGGCAGCTTTGGCTTTGAAAGGACCCGACACGCCCCTTAACTTCCCCAATTCGATCCTTTCCTACCCAGTTCCTGCTTCATTGTCTGCAACTGATATTCGTGCTGCTGCTGAAGCTGCTGCACAAGCTAGGCTTGTGAGGCCACAAAACCCTTCTTCAGGTCAACAACCTCATGAAGCTGTTGAGGGCTCTTCTGGGAGTGGACAAGGTTTTGAGAAGAGTTCCCAACAATATATTGATGAGGATGAGCTTTTGAACATGCCTAATTTGCTTGATGATATGGCTCGTGGAATGCAGCTGCTGAGAAGCTTTGCCCTTTTGCCCTTTGCCCTTTTGCCCTTTGCCTTGTATATTATAGGACATTCAAGGGATAAGGTCACTTTCATCATCACTGTGTTCACGAACGATGCCACCCATTTTTGGGAGTGTTGCGTGTTAGATCCGTAG 684 0.4912 MDDNPSSGNVPVSGAADTVVSSTSFSAAPTTSGEHAVIRYRGTRCRSGKWVSEIREPRKTKRIWLGTYPTAEMAAAAYDVAALALKGPDTPLNFPNSILSYPVPASLSATDIRAAAEAAAQARLVRPQNPSSGQQPHEAVEGSSGSGQGFEKSSQQYIDEDELLNMPNLLDDMARGMQLLRSFALLPFALLPFALYIIGHSRDKVTFIITVFTNDATHFWECCVLDP* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02801 227 MobiDBLite consensus disorder prediction 125 152 - -
Rops6g02801 227 SMART rav1_2 39 101 IPR001471 GO:0003700|GO:0006355
Rops6g02801 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 29 173 - -
Rops6g02801 227 MobiDBLite consensus disorder prediction 123 152 - -
Rops6g02801 227 FunFam Ethylene-responsive transcription factor 2 39 96 - -
Rops6g02801 227 CDD AP2 39 97 IPR001471 GO:0003700|GO:0006355
Rops6g02801 227 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
Rops6g02801 227 ProSiteProfiles AP2/ERF domain profile. 39 95 IPR001471 GO:0003700|GO:0006355
Rops6g02801 227 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700|GO:0006355
Rops6g02801 227 Pfam AP2 domain 44 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02801 Rops-Chr6 50261853 50262891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02801 32 179 AP2-EREBP Transcription Factor Family AT5G52020 51.592 3.43e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops6g02801 AP2 3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02801 - - gmx:100776717 217.238