Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02796 ATGATATCAGGTCGGTGTGCAGCTTGCAAGAATCAGAGAAGGAAATGCCCTTCAGATTGCATTTTCTCTCCTTACTTCCCTCCCAATGATCCTGAAAGATATGCCAGTGTCCACAGGATATATGGTGGCAGCAATGTTGGAAGAATGCTCCAGCAAATTCCACCCTATGCCCGAGCACAGGCTGCAGAGAGTTTATATTATGAAGCACAATGTCGCGTTCAAGACCCTGTTTATGGTTGTTATGGAATTATCTCTCAGCTTATCCAACAGATCCGTAATACAGAAAGTGAATTAGTCAAAATCCAAGCTCAGATTGACATTCTGAAGTTCCAAGCCTCACAAGTTGAACATGAATCAAATTTCTTGTCTGCACAGCAGTTTCAGTTTGATGTCAAATCCAAAAATATCTTCTGGGTCTGCTTAGGGTTTCAATCCAACATCTCTCATTCCCAATGCAAGGAAAATCCAAGATCTGAGATCTGTAACCCTTTGATTACGTTTTTTTTACTATCTGACAACTTTCTGCCTTGTTCTGTTTCACAAAGGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCGGAGCTGGAGCGGCTTTTTAGACGATACGGGAAGGTTGATAGGGTGGATATGAAGTCTGGATTTGCATTTATCTATATGGAAGATGAGAGAGATGCTGAGGCTGCAATTCGTGCTCTTGATCGGGTAGAATTTGGTCGGAAGGGGCGGAGACTTCGTGTGGAATGGACAAAGCAAGAACGTGGCATCAGAAGGCCTTCTGGTTCAAGAAGATCTTCAGCTAATGGAAGGCCATCAAAGACCTTATTTGTAATTAATTTTGATACATATCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAGCCATACGGTAAGATAGTCAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAATCAGAGGATGATGCTTGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTAATGGATCGGGTTATTTCCGTTGAATTTGCTGTTAAAGATGATGATGATAGGCGAAATGGATATAGCCCAGAGAGAGGCCATGATCGTCAACGTGATAGAAGCCGTGATGGAAGGCGATCACCCAGTCCTTATCGTAGAGAAAGGGGTAGTCCTGATTATGGCCGTGGGCCCAGTCCATACAGGAGGGAGAAAAGCAGCCCTGATTATGGCCGTGGCCACAGCCGTAGCAGAAGCCCACATCGGAGAGAACGAGCTAGCCCTGCTTATGGGCGTAGAAGCCTGAGTCCATATAGAAGAGAAATGGATGGTTCTGACCCTGTTCGTGACTCCAGCCGCAGTCCTTATCACAAAGAGCGAGGGAGAACTGACCGGTCTCCCCCCTCCGATAGTCCTGAAGGAGGAGAGAAGACAAGCCCTCAAAATGGTCATGGTTCTAGCCGTAGTCCTTACGATACTGTAAAGGCTAGCCCTGAAAATGACCATGACTCCAGACATAGTCCTGATGCAAAGGGAAACCCCAGCCCTTACAATGGTTATGAAGGGAGCCCCAATACTATGCCTGAGCCCAGGGACAGTCCCAACTATGGTGGCCCTGAAAGTCCCATGCATGAACGATACCGCAGCCAGTCACCCCCTGCAGAAGAATGA 1659 0.4599 MISGRCAACKNQRRKCPSDCIFSPYFPPNDPERYASVHRIYGGSNVGRMLQQIPPYARAQAAESLYYEAQCRVQDPVYGCYGIISQLIQQIRNTESELVKIQAQIDILKFQASQVEHESNFLSAQQFQFDVKSKNIFWVCLGFQSNISHSQCKENPRSEICNPLITFFLLSDNFLPCSVSQRKMRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRVEFGRKGRRLRVEWTKQERGIRRPSGSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDACRALEATNMSKLMDRVISVEFAVKDDDDRRNGYSPERGHDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYRREKSSPDYGRGHSRSRSPHRRERASPAYGRRSLSPYRREMDGSDPVRDSSRSPYHKERGRTDRSPPSDSPEGGEKTSPQNGHGSSRSPYDTVKASPENDHDSRHSPDAKGNPSPYNGYEGSPNTMPEPRDSPNYGGPESPMHERYRSQSPPAEE* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02796 552 MobiDBLite consensus disorder prediction 351 552 - -
Rops6g02796 552 Gene3D - 269 359 IPR012677 -
Rops6g02796 552 Gene3D - 178 268 IPR012677 -
Rops6g02796 552 SUPERFAMILY RNA-binding domain, RBD 184 350 IPR035979 GO:0003676
Rops6g02796 552 CDD RRM1_AtRSp31_like 185 256 - -
Rops6g02796 552 Coils Coil 84 111 - -
Rops6g02796 552 MobiDBLite consensus disorder prediction 468 490 - -
Rops6g02796 552 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 126 - -
Rops6g02796 552 MobiDBLite consensus disorder prediction 351 411 - -
Rops6g02796 552 MobiDBLite consensus disorder prediction 491 505 - -
Rops6g02796 552 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Rops6g02796 552 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Rops6g02796 552 FunFam Serine/arginine-rich splicing factor RS31 184 268 - -
Rops6g02796 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 342 IPR000504 GO:0003723
Rops6g02796 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 245 IPR000504 GO:0003723
Rops6g02796 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 349 IPR000504 GO:0003723
Rops6g02796 552 FunFam Serine/arginine-rich splicing factor RS31 270 360 - -
Rops6g02796 552 SMART rrm1_1 186 253 IPR000504 GO:0003723
Rops6g02796 552 SMART rrm1_1 279 345 IPR000504 GO:0003723
Rops6g02796 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 257 IPR000504 GO:0003723
Rops6g02796 552 MobiDBLite consensus disorder prediction 432 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02796 Rops-Chr6 50156982 50164641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02796 5 122 AS2 family AT3G26620 60.169 8.20e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops6g02796 LOB 7.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02796 K12893 - gmx:100796509 622.854