Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02792 ATGGCATCTTCTCGGGTGGCTGGAGGCTTAACCCAATCATCATCAAGTTCTGGAATATTCTTTCAGGGTGATGGGCAGTCACAAAATGTAGTTAACTCTCACTTAAGCTCATCTTTTGGTAATTCCTCTAACACAATTCCTGGATCTGGGCGTTCAAATCTGGGTCCGATTTCTGGGGATATGAATAATGCAGTTTTAAACAGTGTGGCAAACTCAGCACCAAGTGTTGGAGCCAGTTCTCTAGTCACAGATGCTAATTCTGCGCTTTCTGGAGGCCCCCATTTGCAAAGAAGTGCAAGCTTTAACACAGATTCATACTTACGCTTACCTGCCTCACCCATGTCATTTTCATCAAATAATATTAGTATTTCGGGGTCATCAGTTATGGATGGTTCTTCTGTGGTCCAGCAGAGCTCTCATCCAGACCAGAATGTTCAACAAATGCAGCAAAATCAACAGCAGCCACAATGTGCATCAAGTTCTACATCTTTGCTTCCATCTCAACCTGGCCCAGCTCCACTTCCAATGGGTGCACGAGTGCCAGGATCTTTTATTCAAGATCCAAATAATTTATCCCAGCTTCAGAAGAAACCTCGTCTGGATATCAAGCAGGAAGATATGATGCAACAGCAGGTAATTCAACAGCTTCTTCAGAGACAAGACTCCATGCAGTTCCAGGGTCGTAATCCACAGATACAGGCTTTGCTTCAACAGCAGCAGAGACTTAGGCAACAACAAATCTTGCAATCGATGCCACAGTTACAGCGAGCACACTTGCAACAGCAGCAGCAGCAACAGCAGCAACAACAACAACAAATGCAATTGAGGCAGCAGTTACAGCAACAAGCAATGCAGCCATTATCTGGTGCAAAGCGCCCATATGACAGTGGTGTTTGTGCCCGTCGGTTAATGCAATACCTCTATCATCAAAGGCAACGACCAAATGATAATAGTATTGCCTATTGGAGAAAATTTGTGGCTGAATATTACTCTCCTCGCGCAAAGAAACGGTGGTGCTTGTCATTGTATGATAATGTTGGTCATCACGCACTTGGTGTTTTCCCCCAAGCAGCTATGGATGCATGGCAGTGCGACATATGCGGTTCTAAATCTGGGAGGGGATTTGAGGCGACTTTTGAAGTACTCCCAAGACTTAATGAAATCAAATTTGGAAGTGGTGTGATTGATGAACTTCTGTTTTTGGACTTGCCACGTGAATATAGATTTCCTTCTGGTGTGTTGATGATAGAGTATGCAAAAGCAGTTCAAGAGAGTGTTTATGAGCAACTTCGTGTAGTTCGTGAGGGTCAACTTCGTATCATATTCACACAAGATCTGAAGATATTATCTTGGGAGTTTTGTGCAAGGCGCCATGAAGAACTTCTTCCTCGAAGGTTGGTTGCACCACAGGTCAACCAATTGGTTCAAGTAGCACAAAAATGCCAGAGTACGATTGCTGAAAGTGGATCTGATGGGATTTCTCAGCAGGATTTGCAAACAAACAGCAATATGGTATTGACTGCTGGGCGTCATCTTGCAAAGAGCTTGGAGTTACAGTCACTAAATGACTTGGGTTTCTCCAAAAGATATGTGAGATGTTTGCAGATAGCTGAGGTTGTCAATAGCATGAAAGATCTGATAGATTTCAGCCGGGAGCACAAAGTTGGTGCAATTGAAAGCTTGAAAAATTATCCTCGACATGCAACTGCAGCCAAGCTTCAGATGCAAAAGATGCAGGAGATGGAACAACTAGCAAATGTTCAAGGTCTGCCTACTGATCGAAATACACTTAATAAGTTAATGGCAATGCATCCTGCCTTGAACAATAAAATCAACAACAATCCTAATATGGGTAATCGAGGTGCTTTAAGTGGGTCGGCACAAGCTGCTTTGGCACTGACCAACTACCAGAATCTTCTGATGAGGCAAAACTCGATGAATTCAAATTCTGGCTCTGTTCAGCGAGAAGGATCATCTTCTTTCAATAATTCCAATCAAAGTCCATCTTCAACCTTGCAAGGTGCTGCTGCAGCTTCTTCTGTAATTCCGGGCTCAATGCAGAATTTATCTGTTAGTGGTTTCTCAAGTCCCCATCTGCAACAGGAGCAGCAACTGCAACAACTTCAACAGCGCTCTTTTAGTGCAAATAGCTTACTGCAACAAAGTCATGCACAGGGCTCCCAAGGAAATCAGGCTCTACAACAGCAGATGATCCAACGACTGCTGCAGGAGATGTCTAATAACAGTGGAGGGGTGCAACCCCAGTCCTTTGGTGGACCCAATGCAAATGGTAATATGACAAAGAATGGGCTGGGCTTTAGCGGCCAGACTCCACCCGGAACTGGAGGTGCTACTAATATTTCTGGAAGTAATGGACCTGTTCCTAGTCGAAGCAACAGCTTCAAAGCTGCTTCAAACAGTGATTCTTCTGCAGCTGGTGGCAACAATGGATTTAACCAGAGAACATCTGATATACCACAAAATCTCCATTTGCCAGAAGATGTGGTTCAGGATATTTCCCATGATTTCGTGGATAATGGTTTTTTTAACAGTGATCTAGATGATAACATGGGATATGGCTGGAAGGCTTGA 2592 0.4379 MASSRVAGGLTQSSSSSGIFFQGDGQSQNVVNSHLSSSFGNSSNTIPGSGRSNLGPISGDMNNAVLNSVANSAPSVGASSLVTDANSALSGGPHLQRSASFNTDSYLRLPASPMSFSSNNISISGSSVMDGSSVVQQSSHPDQNVQQMQQNQQQPQCASSSTSLLPSQPGPAPLPMGARVPGSFIQDPNNLSQLQKKPRLDIKQEDMMQQQVIQQLLQRQDSMQFQGRNPQIQALLQQQQRLRQQQILQSMPQLQRAHLQQQQQQQQQQQQQMQLRQQLQQQAMQPLSGAKRPYDSGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSPRAKKRWCLSLYDNVGHHALGVFPQAAMDAWQCDICGSKSGRGFEATFEVLPRLNEIKFGSGVIDELLFLDLPREYRFPSGVLMIEYAKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAESGSDGISQQDLQTNSNMVLTAGRHLAKSLELQSLNDLGFSKRYVRCLQIAEVVNSMKDLIDFSREHKVGAIESLKNYPRHATAAKLQMQKMQEMEQLANVQGLPTDRNTLNKLMAMHPALNNKINNNPNMGNRGALSGSAQAALALTNYQNLLMRQNSMNSNSGSVQREGSSSFNNSNQSPSSTLQGAAAASSVIPGSMQNLSVSGFSSPHLQQEQQLQQLQQRSFSANSLLQQSHAQGSQGNQALQQQMIQRLLQEMSNNSGGVQPQSFGGPNANGNMTKNGLGFSGQTPPGTGGATNISGSNGPVPSRSNSFKAASNSDSSAAGGNNGFNQRTSDIPQNLHLPEDVVQDISHDFVDNGFFNSDLDDNMGYGWKA* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02792 863 Coils Coil 256 282 - -
Rops6g02792 863 PANTHER LIM DOMAIN-BINDING PROTEIN 42 849 IPR029005 -
Rops6g02792 863 MobiDBLite consensus disorder prediction 127 192 - -
Rops6g02792 863 MobiDBLite consensus disorder prediction 747 826 - -
Rops6g02792 863 MobiDBLite consensus disorder prediction 127 167 - -
Rops6g02792 863 MobiDBLite consensus disorder prediction 1 55 - -
Rops6g02792 863 MobiDBLite consensus disorder prediction 646 679 - -
Rops6g02792 863 Pfam LIM-domain binding protein 302 562 IPR029005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02792 Rops-Chr6 50057603 50066384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02792 294 568 C2H2 Transcription Factor Family AT1G43850 60.000 1.74e-111 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02792 - - gmx:100816886 1207.2