Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02780 ATGGGCTTTTTCCGGCGACTCTTCGGCACCAAAAATCCCTCTGACGGGTCGGGTTCCAAATCCAACAAGAGAAGATGGAGCTTCGTCAAAAACATCATCAGGACCAACAAATCACTCACACCACCGCCGCCGCCACCTTCAGCACTCACCCATTTTGATTCCACCACCCCCTTGGACGCCAGCAAACATGCCATCGCCGTTGCCGCCGCTACCGCCGCCGTTGCCGAGGCTGCTCTCGCCGCAGCCCATGCCGCAGCAGAAGTGGTCAGACTTACAGGCGGCAGCGGTGGAGGAAGTAGTACTACAAGCAGGCCCGCCTCGGCTGCGCGTGTTGGCCATCAGCGGTGTCTGGAGGAGAACGCCGCCGTTAAGATACAATCGGCGTTCCGTAGTTACTTGGCAAGGAGGGCATTGAGAGCACTAAAAGCATTGGTGAAGTTGCAAGCATTGGTTAGGGGCCACATTGTGAGAAAGCAAACAGCAGATATGCTCAGGCGCATGCAAACATTGGTGCGTTTGCAGGCCCAAGCACGTGCTAGTCGAGCGCACTTGTCAGATAATACGCGTTCTTTCAAGTCTTCACTTTCTCATTACCCTGTCCCTGAAGAATATGAGCGCCCGCTTCGTGCCTACAGTACAAAATTAGATGGATCTTCTATGCTTAAAAGATGTAGTTCCAATGCAAATTTTAGGAACATTGACTCAGAGAGAGCACGATTTGGTTCCAATTGGTTCAACCGTTGGATGGAAGATGACGCGTGTAGCCAAACCGGAGATGCTTCATTGAAAAATGGACACCCTGATGATGAGAAAAGTGACAAGATTCTCGAAGTAGATACATGGAAACCACACTTCAACTCCCCCCACAGTAGCAGCTCTTTTCAAACAGCACATTATTACATGAGTTCTGATTACAATAATGAGAACTTCATGTCACATGAGTCCCCATCAAAACGTTCAACAAAAGCTCTAAATCAAAACCTCTCATCAAGGGAGGCATTACAGCTAAACTCTTTGAAGTTTCCCAAAGGAAAAGAAGAAGTAACTTCACGAACTGCTGACAATAGTCCACAAGCATTTTCTGCATCATCTAGAACTGGAAATGGTGCAAGGAGAGGTCCCTTCACACCTACAAGGAGTGAGTATTCATGGGGTTACTTCGGTGGCTACTCAGGTTACCCCAATTACATGGCAAACACTGAATCTTCTAGAGCTAAGTTTAGATCACAGAGTGCACCAAAACAAAGGTTAGAGTTTCAAAGATATGGTTCCAGTAGGAGACATGCTCAGAATCTTTGGGATGTAAGGCCTAATTCAGACCGTGATGCTGATTCAAGGAGTAAAGTGTTACCTACCTCAAGTCGTTTGAACAGAATTGGGAGTAACAATTTAAGTTGA 1398 0.475 MGFFRRLFGTKNPSDGSGSKSNKRRWSFVKNIIRTNKSLTPPPPPPSALTHFDSTTPLDASKHAIAVAAATAAVAEAALAAAHAAAEVVRLTGGSGGGSSTTSRPASAARVGHQRCLEENAAVKIQSAFRSYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVRLQAQARASRAHLSDNTRSFKSSLSHYPVPEEYERPLRAYSTKLDGSSMLKRCSSNANFRNIDSERARFGSNWFNRWMEDDACSQTGDASLKNGHPDDEKSDKILEVDTWKPHFNSPHSSSSFQTAHYYMSSDYNNENFMSHESPSKRSTKALNQNLSSREALQLNSLKFPKGKEEVTSRTADNSPQAFSASSRTGNGARRGPFTPTRSEYSWGYFGGYSGYPNYMANTESSRAKFRSQSAPKQRLEFQRYGSSRRHAQNLWDVRPNSDRDADSRSKVLPTSSRLNRIGSNNLS* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02780 465 MobiDBLite consensus disorder prediction 433 448 - -
Rops6g02780 465 MobiDBLite consensus disorder prediction 404 423 - -
Rops6g02780 465 MobiDBLite consensus disorder prediction 404 418 - -
Rops6g02780 465 MobiDBLite consensus disorder prediction 449 465 - -
Rops6g02780 465 PANTHER IQ-DOMAIN 5-RELATED 3 435 - -
Rops6g02780 465 ProSiteProfiles IQ motif profile. 142 169 IPR000048 GO:0005515
Rops6g02780 465 MobiDBLite consensus disorder prediction 429 465 - -
Rops6g02780 465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 163 IPR027417 -
Rops6g02780 465 ProSiteProfiles IQ motif profile. 118 146 IPR000048 GO:0005515
Rops6g02780 465 Pfam Protein of unknown function (DUF4005) 356 420 IPR025064 -
Rops6g02780 465 MobiDBLite consensus disorder prediction 334 375 - -
Rops6g02780 465 MobiDBLite consensus disorder prediction 351 373 - -
Rops6g02780 465 MobiDBLite consensus disorder prediction 1 25 - -
Rops6g02780 465 Pfam IQ calmodulin-binding motif 142 159 IPR000048 GO:0005515
Rops6g02780 465 Pfam IQ calmodulin-binding motif 120 139 IPR000048 GO:0005515
Rops6g02780 465 Gene3D - 117 170 - -
Rops6g02780 465 SMART iq_5 117 139 IPR000048 GO:0005515
Rops6g02780 465 SMART iq_5 140 161 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02780 Rops-Chr6 49941482 49946520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02780 1 419 IQD Protein Family AT5G62070 48.832 5.22e-68 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02780 - - gmx:100783694 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02780 6 49941482 49946520 Rops6g02780 6 49941482 49946520 ECH
Rops5g00839 5 16103246 16108613 Rops6g02780 6 49941482 49946520 PCT