Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02778 ATGCAAAATTCATCTTCCTTTTTCTCAACTCAAAGAAAAATGGAGGGTCATAATGAGATGGGTCTCATTGGTGAAAATTTAGATACTGGTTTGATGGGGAGAATGAGGGACGACGAGTATGAAAGCAGGTCTGGAAGTGATAACTTTGAAGGTTTATCTGGTGATGATCAAGATGGTGGTGATGATCAGCCACAGAGGAAGAAGAGATACCATAGACACACTCCTCATCAAATTCAAGAGCTTGAGGCTTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGGACGGATCTTAGTAAGAGGCTTGGCTTGGAGAATAAACAAGTCAAGTTCTGGTTTCAGAATCGACGAACCCAAATGAAGACCCAGCTTGAACGCCATGAAAACATTATGCTGAGACAGGAAAATGAGAAGCTCAGAGCTGAGAACAGTTTGATGAAGGAAGCGATGACAAATCCAGTATGTAACGGCTGTGGTGGACCAGCCATTCCTGGCCAAATTTCATTTGAGGAGCACCAGATTAGAATTGAAAATGCTCGTCTTAAGGATGAATTGAACCGTATATGTGCCTTAGCAAACAAGTTCCTTGGCAAACCAATATCATCATTGACCAGTCCCATGGCTCTTCCACCCTCAAATTCTGGTCTAGAACTTGGTATTGGAAGGAATGGGATTGGTGGTTCAAGCACTCCCTTGCCAATGGGATTTGATTTGGGAGATGGAGTCTTGGGCACCCAACCTTCTGCAATTCCTGGGATTAGGTCCCCAATTGGATTGATGGGAAATGAAGTTCAGTTTGAGAGGTCAATGCTTATAGATCTTGCATTGGCTGCTATGGAGGAATTAATAAAGCTGGCCCAGACAGATAGCCCTCTTTGGATTAAGAGTTTGGATGGTGAGAGGGAAATATTGAACCATGAGGAGTATGCAAGGTCGTTTTCTCCTTGTATTGGTCCAAAACCATCTGGTTATGTAACTGAAGCTACAAGAGAAACTGGGATAGTAATAATCAACAGTTTAGCCCTTGTGGAAACTTTGATGGATGCGAATCGATGGGCAGAGATGTTTCCATCTATGATTGCTAGAGCTGTCAACCTTGATGTTATATCCAATGGCATGGGTGGAACCAGAAATGGTGCTCTACAAGTGATGCATGCTGAGATTCAATTGCTTTCACCACTAGTTCCGGTTCGACAAGTGAGATTCATCCGGTTCTGTAAGCAACATGCTGAAGGTGTATGGGCTGTGGTTGATGTTTCTATTGAGATTGGTCATGATGCTTCTAATGCACAGCCATTCATGAGTTGTAGGAGGCTTCCTTCTGGCTGTATTGTGCAAGATATGCCTAATGGTTACTCCAAGGTTACATGGCTTGAGCATTGGGAGTATGATGAGAGTGTTATCCACCAACTTTATCGGCCATTGGTTAATAGTGGTGTTGGATTTGGTGCTCATAGATGGATAGCCACACTCCAAAGGCAGTGTGAATGCTTGGCTATCCTAATGTCCTCTTCAATCTCAAATGATGATCACACAGCTTTGAGTCAAGCTGGTAGGAGAAGCATGTTGAAGCTTGCACAACGCATGACCAGTAACTTCTGTTCCGGGGTCTGTGCTTCTTCAGCTCGCAAGTGGGACACCCTTCATATAGGGACCCTGAGTGATGACATGAAAGTGATGACAAGGAAAAATGTTGATGACCCCGGTGAGCCTCCCGGGATTGTCCTCAGTGCTGCAACTTCTGTTTGGATGCCGGTTTCACGCCAAAGGCTGTTCGACTTTATGCGTGATGAGAGGCTGAGAAGAGAGTGGGACATTCTGTCTAATGGTGGACCAATGCAGGAGATGGTTCATATTGCCAAAGGACAAGGACATGGAAATTGTGTTTCTCTCCTTCGTGCTAATGCTGTTAATGCCAATGATAGCAGCATGCTGATTCTGCAAGAGACATGGATGGATGCATCGTGCTCCGTGGTAGTATATGCACCGGTTGACGTGCAATCATTGAATGTGGTGATGAGTGGTGGAGATTCAGCATATGTTGCACTCTTACCTTCTGGCTTTTCCATTCTCCCTGCTCATGGTCATAGCTCTGGCTATGGCAATGGCACTTTACAAAAGGGTGGTGGTGTTGGTGATGATGGTGGTGGAAGCTTGCTCACAGTTGGGTTCCAAATTCTGGTGAATAGCCTCCCAACGGCTAAGCTCACGGTTGAGTCGGTTGATACTGTGAATAGTCTCATCTCATGCACCATTGAGAAGATCAAAGCTGCACTCAGAGTTGCATAA 2292 0.449 MQNSSSFFSTQRKMEGHNEMGLIGENLDTGLMGRMRDDEYESRSGSDNFEGLSGDDQDGGDDQPQRKKRYHRHTPHQIQELEAFFKECPHPDEKQRTDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENEKLRAENSLMKEAMTNPVCNGCGGPAIPGQISFEEHQIRIENARLKDELNRICALANKFLGKPISSLTSPMALPPSNSGLELGIGRNGIGGSSTPLPMGFDLGDGVLGTQPSAIPGIRSPIGLMGNEVQFERSMLIDLALAAMEELIKLAQTDSPLWIKSLDGEREILNHEEYARSFSPCIGPKPSGYVTEATRETGIVIINSLALVETLMDANRWAEMFPSMIARAVNLDVISNGMGGTRNGALQVMHAEIQLLSPLVPVRQVRFIRFCKQHAEGVWAVVDVSIEIGHDASNAQPFMSCRRLPSGCIVQDMPNGYSKVTWLEHWEYDESVIHQLYRPLVNSGVGFGAHRWIATLQRQCECLAILMSSSISNDDHTALSQAGRRSMLKLAQRMTSNFCSGVCASSARKWDTLHIGTLSDDMKVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRLFDFMRDERLRREWDILSNGGPMQEMVHIAKGQGHGNCVSLLRANAVNANDSSMLILQETWMDASCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFSILPAHGHSSGYGNGTLQKGGGVGDDGGGSLLTVGFQILVNSLPTAKLTVESVDTVNSLISCTIEKIKAALRVA* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02778 763 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
Rops6g02778 763 MobiDBLite consensus disorder prediction 1 74 - -
Rops6g02778 763 SMART START_1 274 498 IPR002913 GO:0008289
Rops6g02778 763 FunFam Homeobox-leucine zipper protein HDG1 53 140 - -
Rops6g02778 763 Gene3D - 55 140 - -
Rops6g02778 763 Pfam START domain 275 498 IPR002913 GO:0008289
Rops6g02778 763 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Rops6g02778 763 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 63 760 IPR042160 -
Rops6g02778 763 SUPERFAMILY Bet v1-like 526 757 - -
Rops6g02778 763 CDD homeodomain 66 124 IPR001356 GO:0003677
Rops6g02778 763 SUPERFAMILY Homeodomain-like 53 124 IPR009057 -
Rops6g02778 763 MobiDBLite consensus disorder prediction 31 45 - -
Rops6g02778 763 CDD START_ArGLABRA2_like 269 497 - -
Rops6g02778 763 ProSiteProfiles START domain profile. 265 501 IPR002913 GO:0008289
Rops6g02778 763 SMART HOX_1 65 128 IPR001356 GO:0003677
Rops6g02778 763 Pfam Homeodomain 67 122 IPR001356 GO:0003677
Rops6g02778 763 SUPERFAMILY Bet v1-like 267 498 - -
Rops6g02778 763 FunFam Homeobox-leucine zipper protein GLABRA 2 274 497 - -
Rops6g02778 763 Coils Coil 118 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02778 Rops-Chr6 49904147 49910372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02778 14 760 Homeobox Transcription Factor Family AT3G61150 61.082 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops6g02778 START 1.6e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02778 K09338 - gmx:100785102 1393.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01270 1 29039440 29044722 Rops6g02778 6 49904147 49910372 ECH
Rops6g02778 6 49904147 49910372 Rops6g02778 6 49904147 49910372 ECH