Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02770 ATGGTTCACCCCAAACACTTGAAGTTTCACTCAATTCTCCTCTTCCTTCTTCTTCTTCTTCCTCACTATGGCGTTAAGGCAGAGTCGCCAATACAACCAGCGCCTCCTTTAGCTTCTCCCACTAGATGGGACGTTTCTTCCATTGGCGTCATCGTTGGAGCCTTCATTGCTACCTTTATCTCTGTGGCTGTATTCTCACTGTTCCTCCGCCGTTGCTTTCAGTCATTCTACAACGCAAAGTCTTCATCTCAGGGTATTGACCCTGAACTCCTTAAAACGTTCCCCATCTTATTTTACTCTTCTATCAAACATTTCAAAGAAGGTCCTCTTCAATGTGCTGTTTGCCTCAATGATTTCAACGACCATGACACACTTCGTCTTCTTCCTCAATGTAACCATGTCTTCCACCCTCCATGTATCGATGCTTGGCTTTATTCCCATGTTACCTGTCCCGTTTGTCGTGCAGTTCTCGACCACCGTTGTTCTCCCAAACATGTTGCCATTTCTATTGACACTGTAACTAACGGTCAATGTTCTTCGAGCTGTGGTGGTTGTGAAGGTGAAGGGAGGAAAAACAGTGAAGGGAAGGGTAAAGGGTGGCCGGAACGTGCGTCAAAATCGAAGCTTTTGAGGTCTAATTCCACTGGTCATTCGCCGGTGAAAGATGGTGCGTGTGTGGAGAAATATACCCTGAGGTTGCCGGTGGATGTGATGAACAGTATTTTGATGAAGCATGGGGTGATGCAGCGATCGGCTAGCTATAATTTTGTTGGGAGCTCGATGAAAGGGTTGTGTTGGAGTGATAGTGAAGAGAGTATCAGAGGTAAGACTAAGAAGGGTTCTGTCACAGGAAAAAATCTCAAGTGA 867 0.4579 MVHPKHLKFHSILLFLLLLLPHYGVKAESPIQPAPPLASPTRWDVSSIGVIVGAFIATFISVAVFSLFLRRCFQSFYNAKSSSQGIDPELLKTFPILFYSSIKHFKEGPLQCAVCLNDFNDHDTLRLLPQCNHVFHPPCIDAWLYSHVTCPVCRAVLDHRCSPKHVAISIDTVTNGQCSSSCGGCEGEGRKNSEGKGKGWPERASKSKLLRSNSTGHSPVKDGACVEKYTLRLPVDVMNSILMKHGVMQRSASYNFVGSSMKGLCWSDSEESIRGKTKKGSVTGKNLK* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02770 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 159 IPR013083 -
Rops6g02770 288 SUPERFAMILY RING/U-box 91 160 - -
Rops6g02770 288 PANTHER RING FINGER DOMAIN-CONTAINING 32 157 - -
Rops6g02770 288 FunFam E3 ubiquitin-protein ligase ATL6 74 160 - -
Rops6g02770 288 Pfam Ring finger domain 111 154 IPR001841 -
Rops6g02770 288 MobiDBLite consensus disorder prediction 183 219 - -
Rops6g02770 288 CDD RING-H2_EL5-like 111 154 - -
Rops6g02770 288 SMART ring_2 112 153 IPR001841 -
Rops6g02770 288 MobiDBLite consensus disorder prediction 189 205 - -
Rops6g02770 288 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02770 Rops-Chr6 49731041 49731907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02770 1 263 Rapid Response to Elicitors AT3G05200 34.007 8.44e-45 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02770 K10664 - aprc:113871817 166.777