Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02764 ATGGGGTGCCAGCCACTAGAAAACACAAAACCAAAACATAGGAAGGGTTTATGGTCACCTGAAGAAGACCTTAAGCTAAGAAACCACATCCTTAAGCATGGTCATGGTTGCTGGAGCTCTGTCCCCATTAAAGCAGGCTTGCAAAGGAATGGAAAGAGTTGCAGACTAAGGTGGATTAACTATCTAAGGCCAGGATTAAAGAGAGGGAAGTTCAGCAAACAGGAGGAAGAGACAATCCTCACCCTTCACCACATGTTTGGCAACAAGTGGTCACAGATAGCACAGCATTTATCAGGAAGGACAGACAATGAGATAAAAAATTACTGGCATTCATATTTGAAAAAGAGAGTGTCCAAAGCTAAGGAAACAGAATCTCCAAAACAAATTCAGTATGCTAGCTCAAGCTCAGATACCATGGACTTTCCGCCCTCTCTCCAAAAACTTGCCACTCAAGGTCCACAGAGTTATAACTTCACCAAAGAGTCTTATCAAAGCTCCTTACCAAAACTTTTATTTGCTGAGTGGCTTTCTCTGGATCATGCACATGGTGGGAACTCTGCAAATTCAGTTGACTCTTTGGTCTTGAGGAATGAATTTGATCAAAATTCAACTTTTCAAGAAGCTGCAGTGTATGATATGTCAGAGGGACCCCTTGGAGAGTTTCATAATAATGTAACTAACATTTCAGCCCCTGAAATGTTCAATTCACAGCTAAAATTTGCAAATCAAGTGATGGGAAATGGCTTCATCCATTGTATACCTGGGGTTGACGAAAGTAGCAATTTCAGGCTGAGCAATGATGCAATGTATGTATGA 816 0.413 MGCQPLENTKPKHRKGLWSPEEDLKLRNHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGKFSKQEEETILTLHHMFGNKWSQIAQHLSGRTDNEIKNYWHSYLKKRVSKAKETESPKQIQYASSSSDTMDFPPSLQKLATQGPQSYNFTKESYQSSLPKLLFAEWLSLDHAHGGNSANSVDSLVLRNEFDQNSTFQEAAVYDMSEGPLGEFHNNVTNISAPEMFNSQLKFANQVMGNGFIHCIPGVDESSNFRLSNDAMYV* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02764 271 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Rops6g02764 271 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Rops6g02764 271 CDD SANT 18 62 IPR001005 -
Rops6g02764 271 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Rops6g02764 271 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Rops6g02764 271 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Rops6g02764 271 Gene3D - 69 139 - -
Rops6g02764 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Rops6g02764 271 FunFam MYB transcription factor 70 141 - -
Rops6g02764 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Rops6g02764 271 PANTHER MYB DOMAIN PROTEIN 55 8 185 - -
Rops6g02764 271 Gene3D - 15 67 - -
Rops6g02764 271 CDD SANT 70 113 IPR001005 -
Rops6g02764 271 FunFam MYB transcription factor 12 68 - -
Rops6g02764 271 SMART sant 14 64 IPR001005 -
Rops6g02764 271 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02764 Rops-Chr6 49629855 49632080 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02764 7 201 MYB Transcription Factor Family AT5G52260 53.302 1.31e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g02764 Myb_DNA-binding 9.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02764 K09422 - gmx:778167 443.351