Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02760 ATGGGGTGCCAGCCACTAGAAAACACAAAACCAAAACACAGGAAGGGTTTATGGTCACCTGAAGAAGACCTTGAGCTAAGAAACCACATCCTTAAGCATGGTCATGGTTGCTGGAGCTCTGTCCCCATTAAAGCAGGCTTGCAAAGGAAAGGAAAGAGTTGCAGACTAAGGTGGATTAACTATCTAAGGCCAGGATTAAAGAGAGGGAAGTTCAGCAAACAGGAGGAAGAGACAATCCTCACCCTTCACCATATGTTTGGCAACAAGTGGTCACAGATAGCACAACATTTACCAGGAAGGACGGACAATGAGATAAAAAATTACTGGCATTCATATTTGAAAAAGAGAGTGTCCAAAGCTAAGGAAACAGAATCTCCTAAACAAATTCAGTATGCTAGCTCAAGCTCAGATACCATGGACTTTCCGCCCTCTCTCCAAAAACTTGCCACTCAAGGTCCACAGAGTTATAACTTCACCAAAGAGTCTTATCAAAGCTCCTTACCAAAACTTTTATTTGCTGAGTGGCTTTCTCTGGATCATGTACATGGTGGGAACTCTGCAAATTCAGTTGAATCTTTGGTCTTGAGGAATGAATTTGATCAAAATTCAACTTTTCAAGAAGCTGCAGTGTATGATATGTCAGAGCGACCCCTTGGAGAGTTTCATAATAATGTAACTAACATTTCAGCCCCTGAAATGTTCAATTCACAGCTAAAATTTGCAAATCAAGTGATGGGAAATGGCTTTATCCATTGTATACCTGGGGTTGACGAAAGTAGCAATTTCAGGCTGAGCAACGATGCAATGTATGTATGA 816 0.413 MGCQPLENTKPKHRKGLWSPEEDLELRNHILKHGHGCWSSVPIKAGLQRKGKSCRLRWINYLRPGLKRGKFSKQEEETILTLHHMFGNKWSQIAQHLPGRTDNEIKNYWHSYLKKRVSKAKETESPKQIQYASSSSDTMDFPPSLQKLATQGPQSYNFTKESYQSSLPKLLFAEWLSLDHVHGGNSANSVESLVLRNEFDQNSTFQEAAVYDMSERPLGEFHNNVTNISAPEMFNSQLKFANQVMGNGFIHCIPGVDESSNFRLSNDAMYV* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02760 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Rops6g02760 271 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Rops6g02760 271 PANTHER MYB DOMAIN PROTEIN 55 8 195 - -
Rops6g02760 271 Gene3D - 15 67 - -
Rops6g02760 271 CDD SANT 18 62 IPR001005 -
Rops6g02760 271 Gene3D - 69 139 - -
Rops6g02760 271 SMART sant 67 115 IPR001005 -
Rops6g02760 271 SMART sant 14 64 IPR001005 -
Rops6g02760 271 FunFam MYB transcription factor 12 68 - -
Rops6g02760 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Rops6g02760 271 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Rops6g02760 271 FunFam MYB transcription factor 70 141 - -
Rops6g02760 271 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Rops6g02760 271 CDD SANT 70 113 IPR001005 -
Rops6g02760 271 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Rops6g02760 271 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02760 Rops-Chr6 49586177 49588387 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02760 9 198 MYB Transcription Factor Family AT3G48920 51.813 6.77e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g02760 Myb_DNA-binding 4.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02760 K09422 - gmx:778167 441.81