Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02758 ATGGGTAAAGCACCTTGTTGTGAGAAACATAGAGTGAGAAGGGGAGCTTGGACTCCCGAAGAAGATGAAGCTTTAGTTGAGTACATTAAGAAGCATGGCTATGGAAGCTGGCGTTCACTCCCCAAACATGCAGGTCTCATACGATGTGGAAAAAGTTGTCGGCTTCGGTGGATAAACTATCTTCGCCCTGGCATCAAGCGCGGTCCATTCACTGATGAAGAAGAAAATACTATCATTCAACTTCATGGCATGCTTGGCAACAGGTGGGCTGCTATAGCATCCCAACTACCAGGAAGAACAGACAATGAGATTAAGAACCACTGGAACACTCATCTAAAGAAACGCCTCCTTCGATCACGTCATTCCCTAAGTGCAAAACAACCATGTGTCATTCCTGATAGAAAAATTGTCCATTCTGGATCTCCTTCTACACGTCACATGGTACAATGGGAAAGTGCCAGAGTTGAGGCAGAGGCAAGGTTGTCAATGGAATCCTCATTGCTTAATTCATGGTCAACAAGTAAAACATGCAATGATTACTTTCTTCAACTTTGGCATTCTGAGGTTGGACAGTCATTTCGCATGATCAAGGGAAAGGAGGAAGGAGTGGTGTGTCAAAGCCTTGTCTCACAAGAAGCATCTTCATCATCATCATCATCAAAATTGGAGTCATGCTCAGATGTCTCATTGCAGGTGAATAACACTGAAACTAGTAGCAGCCACAAACCAAAGCTTGAAGATGTCAACATGATTCAAGAACAAGCAAGTAGCTACAAACCAAAGCTTGAAGATGATACAGCTGGTGGGTCAGAGTTGGGCAATTATGAATTTCTTGATACTTCTGATTCTGCACTAAAGCACCTGCTAGATATGCCAGATGGTGATATAGGATTCTTGGGACAAACTGACAATTTCCTGAATCTCCTTGATGGTAGATGTGACTAA 945 0.4307 MGKAPCCEKHRVRRGAWTPEEDEALVEYIKKHGYGSWRSLPKHAGLIRCGKSCRLRWINYLRPGIKRGPFTDEEENTIIQLHGMLGNRWAAIASQLPGRTDNEIKNHWNTHLKKRLLRSRHSLSAKQPCVIPDRKIVHSGSPSTRHMVQWESARVEAEARLSMESSLLNSWSTSKTCNDYFLQLWHSEVGQSFRMIKGKEEGVVCQSLVSQEASSSSSSSKLESCSDVSLQVNNTETSSSHKPKLEDVNMIQEQASSYKPKLEDDTAGGSELGNYEFLDTSDSALKHLLDMPDGDIGFLGQTDNFLNLLDGRCD* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02758 314 CDD SANT 69 112 IPR001005 -
Rops6g02758 314 CDD SANT 16 61 IPR001005 -
Rops6g02758 314 Gene3D - 14 66 - -
Rops6g02758 314 FunFam MYB transcription factor 68 123 - -
Rops6g02758 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops6g02758 314 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops6g02758 314 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops6g02758 314 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 241 - -
Rops6g02758 314 SMART sant 13 63 IPR001005 -
Rops6g02758 314 SMART sant 66 114 IPR001005 -
Rops6g02758 314 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops6g02758 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops6g02758 314 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops6g02758 314 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops6g02758 314 Gene3D - 69 135 - -
Rops6g02758 314 FunFam Myb transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02758 Rops-Chr6 49568646 49571101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02758 1 299 MYB Transcription Factor Family AT3G61250 50.489 9.04e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g02758 Myb_DNA-binding 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02758 K09422 - gmx:100782075 513.842