Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02734 ATGTACAGTATCCTCTCTCCACATCATGAGTCTTCTCCACGCATCAAAATCTGCCACGTTCATGAAACCGCCACCTTCTTCACTATTCCCTTCCTTCATATATCTCACGTTCCCTATGCATCATTCCTCAACACAACAACAATGCAAGCTCCAACCACACTCACCGGATTGCTCCATCATGTCGCCGGAATATTCCCCTCCCGAACAGCCGTCTCTGTCTCCGGCAAGATCCACCTCTCTCACTCTCGCCTCCACAACCTCGTCCAACGCGCCGCCGCACGTTTACTCGCCGCCGGTATCAAACCCGGCGATGTCGTCGCCCTCACCTTCGCCAACACCGTCGAGTTTGTTATATTGTTTTTGGCCGTTATTAGAGCGCGAGCCACGGCGGCACCGTTAAACGCGGCTTATACAACAGATGAGTTTGAGTTTTATTTATCTGACTCAGAATCGAAACTGTTAGTTACGTCGAACGAAGGGAACGAGCCGGCTCAAGCCGCGGCTTCCAAGCTGAAAATCCCGCACTCCACTGCTTGGCTTACTGAAGCCGAAGACTCGGAGCTGAGTCTCTCGCTGAGCCAGACCGAGTCAGTGGCCGACTCGGTTTCTGAACTCACCAATGATCCATCCGACGTGGCACTCTTCCTCCACACCTCCGGCACCACCAGCCGCCCCAAGGGGGTGCCGTTGACACAGCAGAACTTGGCCTCTTCGGTGGAGAATATCAAATCCGTGTACAAACTCACTGAGTCTGACTCGACCGTTATTGTTCTCCCTTTGTTTCACGTTCACGGGTTGATCGCCGGGTTACTGAGTTCACTCGCCGCCGGAGCCTCGGTGGCTCTCCCGGTGTCGGGGCGGTTCTCCGCTTCCACGTTTTGGTCCGACATGTTATCATATAATGCCACGTGGTATACAGCGGTTCCTACCATACACCAAATACTATTGGATCGCCACGTAAGCAGCCCGGAATCCGTTTACCCGAAACTTAGGTTTATTCGGAGCTGTAGTGCCGCGCTGGCTCCGTTTATATTGAGTCGGATCGAGGAGACATTCGGAGCCCCGGTTTTGGAGGCGTATGCTATGACGGAAGCTTCACATTTGATGTCATCGAATCCGTTACCTGAAGATGGGCCCCACAAACCCGGGTCGGTTGGGAAACCCGTGGGTCAAGAAATGGCGATATTGAATGAGAAGGGTGAGGTTCAAACAGCTGGGATGAAAGGAGAGGTTTGTATTAGGGGACCCAATGTGACAAAAGGGTATAAAAATAACCCAGATGCTAATAAGGTTGCGTTTGAATTTGGGTGGTTCCACACTGGTGATCTCGGGTTCTTTGATTCGGATGGGTATTTGCATCTTGTGGGTCGGATCAAGGAGCTTATTAACCGTGGAGGGGAGAAAATATCACCAATCGAGGTGGATGCTGCCCTTCTATATCATCCAGATATTGCTCAGGCAGTTGCATTTGGAGTGCCAGATGACAAATATGGTGAAGAGATAAATTGTGCAATCATCCCAAGAGAAGGATCAAACATTGATGAAGCAGAGGTGCAAAGATTTAGCAAGAAGAATCTTGCAGCCTTCAAAGTCCCCAAAAAGGTTTTCATCACTGATTCTTTGCCCAAGACTGCCACTGGTAAGATTCTAAGGCGTCTTGTGGCAGAACACTTCAGAGCTCAAATTTGA 1689 0.5056 MYSILSPHHESSPRIKICHVHETATFFTIPFLHISHVPYASFLNTTTMQAPTTLTGLLHHVAGIFPSRTAVSVSGKIHLSHSRLHNLVQRAAARLLAAGIKPGDVVALTFANTVEFVILFLAVIRARATAAPLNAAYTTDEFEFYLSDSESKLLVTSNEGNEPAQAAASKLKIPHSTAWLTEAEDSELSLSLSQTESVADSVSELTNDPSDVALFLHTSGTTSRPKGVPLTQQNLASSVENIKSVYKLTESDSTVIVLPLFHVHGLIAGLLSSLAAGASVALPVSGRFSASTFWSDMLSYNATWYTAVPTIHQILLDRHVSSPESVYPKLRFIRSCSAALAPFILSRIEETFGAPVLEAYAMTEASHLMSSNPLPEDGPHKPGSVGKPVGQEMAILNEKGEVQTAGMKGEVCIRGPNVTKGYKNNPDANKVAFEFGWFHTGDLGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAALLYHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEAEVQRFSKKNLAAFKVPKKVFITDSLPKTATGKILRRLVAEHFRAQI* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02734 562 FunFam 4-coumarate--CoA ligase 2 460 561 - -
Rops6g02734 562 SUPERFAMILY Acetyl-CoA synthetase-like 43 561 - -
Rops6g02734 562 CDD FACL_fum10p_like 66 556 IPR045310 GO:0016874
Rops6g02734 562 FunFam Peroxisomal-coenzyme A synthetase 53 457 - -
Rops6g02734 562 Pfam AMP-binding enzyme 62 464 IPR000873 -
Rops6g02734 562 Gene3D - 458 561 IPR045851 -
Rops6g02734 562 PANTHER ACYL-COA SYNTHETASE 53 561 - -
Rops6g02734 562 Pfam AMP-binding enzyme C-terminal domain 473 548 IPR025110 -
Rops6g02734 562 ProSitePatterns Putative AMP-binding domain signature. 215 226 IPR020845 -
Rops6g02734 562 Gene3D - 53 457 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02734 Rops-Chr6 49132317 49135556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02734 52 562 Monolignol Biosynthesis Gene Families AT4G05160 30.957 3.18e-61 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02734 K22133 - gmx:100783685 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02734 6 49132317 49135556 Rops6g02734 6 49132317 49135556 ECH