Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02729 ATGGAGTTTCTAGGGCTATTTGGGGTTCTTGTTGCCTTCTTGGCAGCACTTTTGCTCTTGATACTAACATTTTCTTGGTGGGTTTTCCCTATCCAAACACATAAGAAGCTTAAAAGATGTGGGTTTGGAGGACCAACCCCAAGTTTTCCACTTGGAAACATTAAAGAGATGAAAAGAAAGAATAGCATTCATTCTTCAGTTGTACCCTCAAATCTCACACATGATATTCATTCAAACGTTTTTCCCTACTTTTCTTGCTGGCAGAAATCACATGGTAAGGTGTTCGTCTACTGGTTGGGAACGGAGCCATTCTTGTACGTTGCAGAGCCAGAGTTCTTGAAGAAAATGTCAACTGTTGTGATGGCCAAGAAATGGGGAAAACCAAGTGTGTTTAGAAATGACAGAGACCCCATGTTTGGGTCTGGTTTGGTCATGGTCGAGGGCAACGATTGGGTTCGTCACCGCCACATTGTTGCCCCCGCATTCAATCCCCTTAACCTCAAGGTCATGGCAGGCATGATGGTTCAGTGTACGAATCAAATGATAAATAGATGGGCTACCCAAATAAACTCTGGCAACCCCGAAATCGATGTGGAAAAAGAGATTATAGCAACAGCTGGAGAGATCATAGCAAGAACAAGTTTTGGTATGGAAGATGAAAATGCAAGAGAGGTGTTTGACAAATTAAGAGCCTTGCAAATGACTCTCTTTAAGACCAATCGATATGTAGGGGTTCCCTTTGGCAAGTATTTCAATGTCAAGAAAACCTTAGAGGCCAAGAAACTTGGGAAAGAAATCGACAACCTCTTGTCCTCCATCATAGAAGCTAGGAAGAGGTCACCAAAGAAGAATTCTCAAAAAGATTTGTTAGGTTTATTGCTGCAAGAAAATAATCATGTTGATGGTCGATCTGGAAAGACATTAACAACACGAGAAGTGGTTGATGAATGCAAAACCTTCTTCTTTGGTGGCCATGAAACCACAGCACTTGCTATCTCATGGACTTTGCTACTTCTAGCCATGCATGAAGATTGGCAAAACCAGTTGAGAGATGAGATAAGAGAAGTGGTGGGAACCAATGAGCTTGATATCACTATGCTTGGTGGTTTGAATAAGATGAAGTGGGTGATGCATGAAGTTCTACGACTATACCCACCAGCCCCAAATGTGCAAAGACAAGCAAGGGAAGACATTCAAGTTGATGATTTAACTGTACCAAGTGAAACCAACTTGTGGATCGATGTAGTAGCAATGCACCACGACCCTGCATTATGGGGAAAGGATGCGAACGAGTTCAGACCTGAGAGGTTCATGGATGATGTAAATGGTGGGTGCAACCACAAGATGGGGTACTTGCCTTTCGGATTTGGAGGGAGGATGTGTGTTGGTAGGAACTTGACCTTCATGGAGTACAAGATTGTATTAACCCTACTTCTCTCTAGGTTTAGTTTTAAGCTTTCACCAGGTTACCATCATTCACCATCTATCATGCTCTCCCTAAGGCCCACTCATGGACTTCCTCTCATAGTTCAGCCCCTTTAG 1542 0.4287 MEFLGLFGVLVAFLAALLLLILTFSWWVFPIQTHKKLKRCGFGGPTPSFPLGNIKEMKRKNSIHSSVVPSNLTHDIHSNVFPYFSCWQKSHGKVFVYWLGTEPFLYVAEPEFLKKMSTVVMAKKWGKPSVFRNDRDPMFGSGLVMVEGNDWVRHRHIVAPAFNPLNLKVMAGMMVQCTNQMINRWATQINSGNPEIDVEKEIIATAGEIIARTSFGMEDENAREVFDKLRALQMTLFKTNRYVGVPFGKYFNVKKTLEAKKLGKEIDNLLSSIIEARKRSPKKNSQKDLLGLLLQENNHVDGRSGKTLTTREVVDECKTFFFGGHETTALAISWTLLLLAMHEDWQNQLRDEIREVVGTNELDITMLGGLNKMKWVMHEVLRLYPPAPNVQRQAREDIQVDDLTVPSETNLWIDVVAMHHDPALWGKDANEFRPERFMDDVNGGCNHKMGYLPFGFGGRMCVGRNLTFMEYKIVLTLLLSRFSFKLSPGYHHSPSIMLSLRPTHGLPLIVQPL* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02729 513 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 454 463 IPR017972 GO:0005506|GO:0016705
Rops6g02729 513 SUPERFAMILY Cytochrome P450 73 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02729 513 Coils Coil 259 279 - -
Rops6g02729 513 Gene3D Cytochrome P450 26 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02729 513 PRINTS E-class P450 group I signature 374 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02729 513 PRINTS E-class P450 group I signature 451 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02729 513 PRINTS E-class P450 group I signature 461 484 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02729 513 PRINTS E-class P450 group I signature 312 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02729 513 PRINTS E-class P450 group I signature 332 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02729 513 PRINTS E-class P450 group I signature 415 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02729 513 PRINTS E-class P450 group I signature 88 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02729 513 Pfam Cytochrome P450 77 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02729 513 PANTHER CYTOCHROME P450 FAMILY MEMBER 20 505 - -
Rops6g02729 513 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02729 513 PRINTS P450 superfamily signature 375 386 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02729 513 PRINTS P450 superfamily signature 452 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02729 513 PRINTS P450 superfamily signature 461 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02729 Rops-Chr6 49044484 49048719 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02729 6 513 Cytochrome P450 AT5G52400 58.527 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02729 - - gmx:100785284 908.672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02729 6 49044484 49048719 Rops5g00891 5 17272550 17277698 PCT