Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02728 ATGAAGAGGTCAGATCGGGTGAGTGCTTCCGCACTGTACCATGAGCGGCACACCAATGGCGGCGTTTCGATTGCGCCAGGAAGTAAGGAAGCGGAGCACGTTCTCCAGAATGTTCATAGTCGAAACCCCATATGTTTAATTCTCATTACAGTTGTCACCACCACTGCAAATCTCTCCAACAACTACAATAAAGCTCCAATCTTAGGTAAGGTGTTCGTGTACTGGCTGGGAACGGAGCCATTCTTGTACGTTGCAGAGCCAGAGTTCTTGAAGAAAATGTCAACTGTGGTGATGGCCAAGAAATGGGGAAAACCAAGTGTGTTTAGAAATGATAGAGACCCCATGTTTGGGTCTGGTTTGGTCATGGTCGAGGGCAATGAATGGGTTCGTCACCGCCACATTGTTGCCCCCGCATTCAATCCCCTTAACCTCAAGGTTATGGCAGGCATGATGGTTGAGTCTACGAATCAAATGATAGAAAGATGGGATACCCAAATAAACTCTGGCAACCTCGAAATCGACGTGGAGAAAGAGATTATAGCAACAGCTGGAGAGATCATTGCAAGAACAAGTTTTGGCATGGAAGATGAAAATGCAAGAGAGGTGTTTGACAAATTAAGAGCCTTGCAAATGACTCTCTTTAAGACCAATCGGTATGTAGGTGTTCCCTTTGGCAAGTATTTCAATGTCAAGAAAACCTTAGAGGCCAAGAAACTTGGGAAAGAAATCGACAACCTCTTGACCTCCATCATAGAAGGTAGGAAGAATTCACCCAAGAAGAATTCTCAACAAGATTTGTTAGGTTTGTTGCTGCAAGAAAATCATGGCCGATCAGGAAAGACATTAACAACGCGAGAAGTGGTTGATGAATGTAAGACATTCTTCTTTGGTGGCCATGAAACCACAGCACTTGCTATCTCATGGACTTTGCTACTTCTAGCTACGCACGAAGATTGGCAAAACCAGTTGAGAGATGAGATAAGAGAAGTGGTCGGAAACAATGAGCTTGATATCACTATGCTTTCTGGTTTAAAGAAGATGAAGTGTGTCATGAATGAAGTTTTGCGACTGTACCCACCAGCACCAAATGTGCAAAGACAAGCAAGAGAAGACATTCAAGTTGATGATTTAACTGTGCCTAATGGAACCAACTTGTGGATCGATGTCGTAGCCATGCACCACGACCCTACATTATGGGGAAAGGATGTGAATGAGTTCAGACCAGAGAGGTTCATGGATGATGTCAATGGTGGGTGCAGCCACAAAATGGGGTACTTGCCTTTTGGGTTTGGAGGAAGAATGTGTGTGGGTAGGAACTTGACCTTCATGGAGTACAAGATTGTATTAACCCAACTTCTCTCTAGGTTTAGTTTTAAGCTTTCACCAGGTTACCATCATTCACCATCTATCATGCTCTCCCTAAGGCCCACTCATGGACTTCCACTAATAGTTCAGCCCCTTTAG 1464 0.4426 MKRSDRVSASALYHERHTNGGVSIAPGSKEAEHVLQNVHSRNPICLILITVVTTTANLSNNYNKAPILGKVFVYWLGTEPFLYVAEPEFLKKMSTVVMAKKWGKPSVFRNDRDPMFGSGLVMVEGNEWVRHRHIVAPAFNPLNLKVMAGMMVESTNQMIERWDTQINSGNLEIDVEKEIIATAGEIIARTSFGMEDENAREVFDKLRALQMTLFKTNRYVGVPFGKYFNVKKTLEAKKLGKEIDNLLTSIIEGRKNSPKKNSQQDLLGLLLQENHGRSGKTLTTREVVDECKTFFFGGHETTALAISWTLLLLATHEDWQNQLRDEIREVVGNNELDITMLSGLKKMKCVMNEVLRLYPPAPNVQRQAREDIQVDDLTVPNGTNLWIDVVAMHHDPTLWGKDVNEFRPERFMDDVNGGCSHKMGYLPFGFGGRMCVGRNLTFMEYKIVLTQLLSRFSFKLSPGYHHSPSIMLSLRPTHGLPLIVQPL* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02728 487 Gene3D Cytochrome P450 41 487 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02728 487 PANTHER CYTOCHROME P450 FAMILY MEMBER 64 479 - -
Rops6g02728 487 PRINTS P450 superfamily signature 349 360 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02728 487 PRINTS P450 superfamily signature 426 435 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02728 487 PRINTS P450 superfamily signature 297 314 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02728 487 PRINTS P450 superfamily signature 435 446 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02728 487 PRINTS E-class P450 group I signature 286 303 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02728 487 PRINTS E-class P450 group I signature 348 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02728 487 PRINTS E-class P450 group I signature 306 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02728 487 PRINTS E-class P450 group I signature 389 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02728 487 PRINTS E-class P450 group I signature 435 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02728 487 PRINTS E-class P450 group I signature 425 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02728 487 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02728 487 SUPERFAMILY Cytochrome P450 65 486 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02728 487 Pfam Cytochrome P450 56 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02728 487 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 428 437 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02728 Rops-Chr6 49030835 49036327 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02728 69 487 Cytochrome P450 AT5G52400 64.133 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02728 - - gmx:100785284 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02728 6 49030835 49036327 Rops6g02728 6 49030835 49036327 ECH
Rops5g00891 5 17272550 17277698 Rops6g02728 6 49030835 49036327 PCT