Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02724 ATGTCAGAATCTGAGGAAGAAAATCCAGATTTTCCTCCAAAGACAAAGCCACCAGAGGAACCTGGGTGTGCCATGGATTTTGATCTGGACCTGGATTGGCCTTTGGATCACATATCCTTTGTTTCCAACACCATGTCACCTTTTCAGTTCTCCACTATCTCTGACCAACCTTCCTCTCCTCTTTGGGTTTTTCGTGATGGGGAAGATGATAGGCATGCCAAGCTTACAGCTTCAGCCTTCTCTGATTGCCACAAGATCTTCTCTTGTGATTCAAATTCAATAACTGAGAAGCCAGAGGAGAATGATGGCAAGAAAAAACTTTTGCCACCTCTTGTGGCTCCGCCACCAGTAGAAAATTTGGATGGATATTTTGTACTCAAGGAAAGGATGACACAAGCACTTCGCCACTTCAAAGAGTTGACTGAACTGAATGTTCTGGCTCAGGTTTGGGCACCTGTGAGGAATGGTAATCGGTATGTGCTTACAACTACAGGTCAACCCTTCGTACTTGATCCACATAGTAATGGACTCCATCAGTATAGAACGGTCTCCTTGATGTACGTGTTTTCTGTCGATGGAGAGAATGATGGAACTCTGGGACTTCCTGGTCGGGTTTTTATGCAAAAATTACCAGAATGGACTCCCAATGTTCAGTATTATTCTAGTAAAGAGTATCCACGTCGGGATCATGCTCAGCATTACAATGTTCGTGGATCCTTGGCTTTGCCTGTGTTTGAACCTTCTTTGCAGTCATGTGTTGGTGTACTTGAGTTGATAATGACTTCACAGAAGATTAACTATGCTCCTGAGGTTCAAAAAATCTGCAAAGCCCTTGAGGCAGTAAATTTGAGGAGTTCAGAAATTTTGGACCAGCCATACACTCAGATTTGCAATGAAGGCCGTCAGAATGCATTATCAGAGATCTTGGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTCTGGCCCAAACATGGGTTCCCTGTAGGTATCGGAGTGTTTTGGCCCAGGGTGGTGGTCTGAAGAAAAATTGTTCCAGTTTTGATGGTAGTTGCATGGGGCAAGTTTGCATGTCTACAACTGATATAGCATTCTATATCATAGATGCTCATTTATGGGGTTTTCGGGAAGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGTTTTTTCATCTCACAGCATGTGCTTCTGCTCAAACATTACTCAATTCTGTAAAACTGATTACCCCTTAGTTCATTATGCTCTAATGTTTGGGTTAACAAACTGTTTTGCAATCTGTTTACGGAGCTCTCATACAGGAAATGATCATTATGTATTAGAGTTTTTCCTGCCTCCGAGGATCACAGACTTTAATGAACAGAAGTCACTGTTGGGATTGATATTGGCAACAATGAAACAGCATTTCCAGAGTCTTAAGATTGCTTCAGGTGTTGAACTTGAGGAGAATGGTTCAATTGAAATTATTGAAGCAGCAAATGAAAGAGTTCATCTGAGGCTTGAATCTATTCCAATTGCCCAATCTATCAAATCACCACCTGGACCTGGTGCCTCACCAAATATAGGGGAGGAAGTGACCCAGGATCCATCAGAACAACAAATAATGATGTACTGTAATGACATAAATGAAGGGGGGAATCATGGTGATAATGCAGGGGGAAACATTGATCAAATGTCCTCCTTAGAGACTAAAAACATAAAGAAACCCTTAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTCTACAACATTATTTCGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACAACAATGAAGCGCATCTGTAGGCAGCACGGAATATCCCGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCTCTATCCAAGCTCAAGCGTGTGATTGAATCTGTCCATGGTGTTGAAGGAGCATTTGGTTTGAATTCTCTCAGCACAAGTCAACTTCCCATTGCTGTTGGTTCCTTTCCTGAGCCTTCTATGCCAAATAAGTTCAGCCAGCAAGCCTCATTAAGCATCAGGCCATCAGAGCCTCAGATGAAAGAGAATGAAATTGATGCCTATAAAGTATTAGAAACAAACATACAGGCTGGAATGGAAGATCAATTGCTAAGAGGAAGGGCACCAAGTCCTGAGAAAGTGATTAATGATAAAGGTGTGTCTACTAGGGATGTTGGGAAAGACCCAAAAAGGACTAGAACTGGGAGTGGCTCAAGTGAAGATAGCACAAATCCTACTTCTCATGGTTCATGCCATGGTAGTCCCCCAAATGAAAGTTCACCTGTAAAAGATGTATTCATTACATCCCACAATAAGCAACATGTTGTGCTTAGGGGATCGCCAGAGTCTATACTGCAGCCAACTAATACATTGAACTCTCCAACTGCTTACCCTATGCCTGACATTGTGGCAACAAAACTTCAAGAGCCATTTGGAGGAATACTAATAGAGGATGCTGGTAGTTCTAAAGACTTAAGAAATTTGTGTCCTTCAGTAGCAGAGGCCATTTTGGAGGATCTGGTTCCAGAAGCTTGTGGGACTAATCCTCCAGGTTTTGATTTGGCACCTAAGCAACCTATGGATACTCATGATAAAGCAATGACACCTTTTGCAGCTAGGAAAGAAATGAAAACTGTGACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTTCGGGTCTCTTTGGCCTGTGGCATTGTGGAGTTGAAAGAAGAAGTTGCCAAAAGATTTAAGTTAGAGGTGGGTATATTTGATATCAAGTACCTGGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGAGGTTTCAAGATCATCAGGAAGCAACATAATCAGGGTTTTGGTGCATGACATAACGTCCAATCTTGGAAGCTCCTGTGAAAGCTCAGGGGAGTGA 2970 0.4239 MSESEEENPDFPPKTKPPEEPGCAMDFDLDLDWPLDHISFVSNTMSPFQFSTISDQPSSPLWVFRDGEDDRHAKLTASAFSDCHKIFSCDSNSITEKPEENDGKKKLLPPLVAPPPVENLDGYFVLKERMTQALRHFKELTELNVLAQVWAPVRNGNRYVLTTTGQPFVLDPHSNGLHQYRTVSLMYVFSVDGENDGTLGLPGRVFMQKLPEWTPNVQYYSSKEYPRRDHAQHYNVRGSLALPVFEPSLQSCVGVLELIMTSQKINYAPEVQKICKALEAVNLRSSEILDQPYTQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCRYRSVLAQGGGLKKNCSSFDGSCMGQVCMSTTDIAFYIIDAHLWGFREACVEHHLQQGQGVAGRVFSSHSMCFCSNITQFCKTDYPLVHYALMFGLTNCFAICLRSSHTGNDHYVLEFFLPPRITDFNEQKSLLGLILATMKQHFQSLKIASGVELEENGSIEIIEAANERVHLRLESIPIAQSIKSPPGPGASPNIGEEVTQDPSEQQIMMYCNDINEGGNHGDNAGGNIDQMSSLETKNIKKPLERKRGKTEKSISLEVLQHYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVHGVEGAFGLNSLSTSQLPIAVGSFPEPSMPNKFSQQASLSIRPSEPQMKENEIDAYKVLETNIQAGMEDQLLRGRAPSPEKVINDKGVSTRDVGKDPKRTRTGSGSSEDSTNPTSHGSCHGSPPNESSPVKDVFITSHNKQHVVLRGSPESILQPTNTLNSPTAYPMPDIVATKLQEPFGGILIEDAGSSKDLRNLCPSVAEAILEDLVPEACGTNPPGFDLAPKQPMDTHDKAMTPFAARKEMKTVTIKATYREDIIRFRVSLACGIVELKEEVAKRFKLEVGIFDIKYLDDDHEWVLIACDADLQECMEVSRSSGSNIIRVLVHDITSNLGSSCESSGE* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02724 989 CDD PB1_NLP 895 975 IPR034891 -
Rops6g02724 989 FunFam RWP-RK domain-containing protein 891 975 - -
Rops6g02724 989 ProSiteProfiles RWP-RK domain profile. 573 654 IPR003035 -
Rops6g02724 989 PANTHER PROTEIN NLP8 55 988 IPR045012 GO:0003700
Rops6g02724 989 Pfam PB1 domain 894 975 IPR000270 GO:0005515
Rops6g02724 989 MobiDBLite consensus disorder prediction 733 751 - -
Rops6g02724 989 Gene3D - 891 975 - -
Rops6g02724 989 MobiDBLite consensus disorder prediction 1 26 - -
Rops6g02724 989 ProSiteProfiles PB1 domain profile. 894 976 IPR000270 GO:0005515
Rops6g02724 989 MobiDBLite consensus disorder prediction 717 779 - -
Rops6g02724 989 MobiDBLite consensus disorder prediction 752 779 - -
Rops6g02724 989 SUPERFAMILY CAD & PB1 domains 892 979 - -
Rops6g02724 989 SMART PB1_new 894 976 IPR000270 GO:0005515
Rops6g02724 989 Pfam RWP-RK domain 586 634 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02724 Rops-Chr6 48923700 48928421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02724 260 989 NLP Transcription Factor Family AT4G24020 52.330 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Rops6g02724 PB1 3.5e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02724 - - gmx:100786118 1657.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00899 5 17481847 17489184 Rops6g02724 6 48923700 48928421 PCT