Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02723 ATGACTGCAAAGTTGGGTGGGGGAGTGACATGCTCATGGCAACCACCATTAAAAACATTTAATGATGGTGCTGCTAGATTGCCCAAAAAGGGTTGTCTTTCTTTTTTTGGTAACCGACAGAAAAAGCAAAGAACCTGCTCTCAACCACATACGGGAAGCAGAAAAAGGAACAAGGATCTTGCTGGAGAAGCACCAAAGGGTTTCGGAACCCACAAGCACGAGAGGGAAATGGCTCCTAAACAACCTAGTACGGGTCTGTTTGTTGGATTGAACAAGGGTCATGTTGTTACTAAGAAGGAATTGCCTGCACGCCCCTCAGATCGCAAGGGGAAAACAAGCAAGAGGGTGCACTTTGTAAGGAATCTCATTCGGGAGGTTGCTGGTTTTGCACCTTATGAAAAGCGTATAACTGAGTTACTCAAGGTTGGGAAAGATAAGAGGGCACTGAAAGTTTCAAAGAGAAAGCTTGGAACTCACAAACGAGCTAAGAAGAAGCGTGAGGAGATGTCCAACGTTCTCAGGAAGATGAGGGCTGGTGGAGCTGGAGACAAGAAGAAATAA 561 0.4563 MTAKLGGGVTCSWQPPLKTFNDGAARLPKKGCLSFFGNRQKKQRTCSQPHTGSRKRNKDLAGEAPKGFGTHKHEREMAPKQPSTGLFVGLNKGHVVTKKELPARPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVSKRKLGTHKRAKKKREEMSNVLRKMRAGGAGDKKK* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02723 186 Gene3D 60S ribosomal protein L36 74 183 IPR038097 -
Rops6g02723 186 Pfam Ribosomal protein L36e 84 177 IPR000509 GO:0003735|GO:0005840|GO:0006412
Rops6g02723 186 MobiDBLite consensus disorder prediction 38 113 - -
Rops6g02723 186 MobiDBLite consensus disorder prediction 52 79 - -
Rops6g02723 186 MobiDBLite consensus disorder prediction 163 186 - -
Rops6g02723 186 ProSitePatterns Ribosomal protein L36e signature. 131 141 IPR000509 GO:0003735|GO:0005840|GO:0006412
Rops6g02723 186 FunFam 60S ribosomal protein L36 77 182 - -
Rops6g02723 186 MobiDBLite consensus disorder prediction 152 186 - -
Rops6g02723 186 PANTHER 60S RIBOSOMAL PROTEIN L36 69 184 IPR000509 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02723 Rops-Chr6 48912710 48918778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02723 83 186 Cytoplasmic Ribosomal Protein Gene Family AT5G02450 82.692 9.87e-56 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02723 K02920 - gmx:100526979 214.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02723 6 48912710 48918778 Rops6g02723 6 48912710 48918778 ECH