Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02719 ATGGGTAGCGTCGAAGAAGGGGTTGCGGTTGCGAAAGAAGACACAGTGTATGTTGCGGTGGGGAAGAACGTGGAGAAGAGCCAACAACTGTTGCATTGGACAACTCAGAATTTCTCGGGGAAGAAAATTTGTGTTCTTCATATTCACCAACCTGACACTACAATTTCGTTGACAGACAGAAATCTCTCTGGATGGCTTGTGATGGGAGATGCAGCAGGCAGATATAAGTTTAGTAAACTGGCTGAGCAGGTGTCAGAGGAAGCTATTCTTGTACACGAACAGGCATTGCTATCCTGTAATATTTTGTTCATTTGCAAGGGCAGTGTCATATGTGCTAGGGTAGATAGTAAAAATACATCTGAAATAGAGACTGCCCCTGCATTGTTAGTGCTCCATTCAAATATGGAAGTCAAACAAGCAGAGAAGATTAAATCAGAATCGATTCCTGATGCATTGAAATATTTAGATTCTGATGATATGGAAGAGATTGGTAATGTCAGTTCCCACTGTTCATTAAATGCAAAAGGGTCCTTTAGTAGTGTTATTGACCGGTCAAAGTTGACAGATTTGCTGTTTCATGAGGGGGAAGAAGATGAAAGGGAACAAACAAGTGAAACAAATGGTAGACTGGAAAAAACCACCATTGATGCTAAGAAGATAAAATGGAAAGGATTAGGAGAGGCATTAAAGAGATGGAAAGTAGCAAATAGTACTATGGAGGATGAAGCATTAGAAAGCCAGTGTGCTCAGGAGAGAAGTAGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGGAAAAACAAGAAGTACAGAAAATCAAGAATCAGCGAGATGAATTAATGTCTGAATTGCAAATGGTCCACGACCAAAATTCCGCACTTAAGAACCAGTTTTTTGAGTCCCAGTGTACAGTGACAGAGTTGGAGGAGAAGATCATATCAGCTGTGGACCTCTTGATAAGTTTCAAGGAAAAACGAGATAAGCTAAGGATAGAACATGCAAATGCAGTTAGGAAAGTCAGAGCACTAAGAAAATCTGGAGAAGCAGATACTGCATTCTCTTATGTGGTAGAATTCCCTGCATTTTCTTTCATGGAGATCAATGAGGCAACTCACGAATTTGACCCATCTTGGAGGATTGGAGAGGGAAGGTATGGAAGCGTTTACAAGGGACTGCTTCACAACATGCTTGTTGCCATAAAAATGTTACCCTCTTACGGTTGTCAAAGCCTATTGGAGTTCCAACGTCAGGTAGAGGTTTTGAGTAGGGTAAGACATCCAAACCTGTTAACACTAATTGGAAGCTGTGCAGAGTCTAGGTCACTTGTGTATGAGTACCTCAACAATGGCAGCCTTGAAAGCCACCTCGCCCGCAAAGACAAGACTCCACTTCCATGGCAAATTCGAATATCCATTGCTTCTGACATATGCTCTGCTCTAACCTTCCTTCACTCCAGTGATCCTTGTATTATCCATGGGAATTTGAAACCTAGTAAGGTTCTCCTTGATGCTAACTTTGTTGCCAAACTTGGTGACTTGGGCATTCCTTCTTTAGTCCAGCAAAGTGTGGATAACAACCCAAATGAAAGTTTGGCATATGTGGATCCGGAGTATATTGTCACTGGCAAGCTTAAGCCAGAATCAGATGTGTATTCATTTGGAATCATATTGTTACAGCTTCTTACTGGAAGACCACTTTCGGGGCTAGTTAGAGATGTAAAATGTGCATTAGAAAATGAAAACCTCAAAGCAGTGTTGGACTTTTCCGCTGGTGAATGGCCGCTTTATCAAACCAAACAGCTTGCATATTTAGCATTTAGGTGTTGTGAAAAGACTTGGTTGAACCGACCGGACCTTGTGTCAGAAATCTGGAGTGTTCTTGAACCATTCAGAACTACTTGCATCAACATGCCACCAAATTTGACTTCTAAGAAGCTTCAACGTGCTCCTTCCCATTTTGTCTGCCCCATTTTCCAGGAAGTTATGGAAGATCCATACATAGCTGCAGATGGCTTTACATATGAAGAAGAGGCTATAAATGGATGGTTGAAAAGTGGTCATGATACTTCCCCCATGACAAACCTCAAGCTTGAACACACGGATTTGCCTGCACGAACGACAGGGTCTCCTCTTCGCCATTTTCTCGCATTTTCTTGA 2154 0.4178 MGSVEEGVAVAKEDTVYVAVGKNVEKSQQLLHWTTQNFSGKKICVLHIHQPDTTISLTDRNLSGWLVMGDAAGRYKFSKLAEQVSEEAILVHEQALLSCNILFICKGSVICARVDSKNTSEIETAPALLVLHSNMEVKQAEKIKSESIPDALKYLDSDDMEEIGNVSSHCSLNAKGSFSSVIDRSKLTDLLFHEGEEDEREQTSETNGRLEKTTIDAKKIKWKGLGEALKRWKVANSTMEDEALESQCAQERSRRKEVEEQLAREKQEVQKIKNQRDELMSELQMVHDQNSALKNQFFESQCTVTELEEKIISAVDLLISFKEKRDKLRIEHANAVRKVRALRKSGEADTAFSYVVEFPAFSFMEINEATHEFDPSWRIGEGRYGSVYKGLLHNMLVAIKMLPSYGCQSLLEFQRQVEVLSRVRHPNLLTLIGSCAESRSLVYEYLNNGSLESHLARKDKTPLPWQIRISIASDICSALTFLHSSDPCIIHGNLKPSKVLLDANFVAKLGDLGIPSLVQQSVDNNPNESLAYVDPEYIVTGKLKPESDVYSFGIILLQLLTGRPLSGLVRDVKCALENENLKAVLDFSAGEWPLYQTKQLAYLAFRCCEKTWLNRPDLVSEIWSVLEPFRTTCINMPPNLTSKKLQRAPSHFVCPIFQEVMEDPYIAADGFTYEEEAINGWLKSGHDTSPMTNLKLEHTDLPARTTGSPLRHFLAFS* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02719 717 ProSitePatterns Protein kinases ATP-binding region signature. 379 400 IPR017441 GO:0005524
Rops6g02719 717 Gene3D Transferase(Phosphotransferase) domain 1 447 635 - -
Rops6g02719 717 PANTHER OS02G0152300 PROTEIN 65 704 - -
Rops6g02719 717 Gene3D Phosphorylase Kinase; domain 1 344 445 - -
Rops6g02719 717 SUPERFAMILY RING/U-box 646 701 - -
Rops6g02719 717 CDD RING-Ubox_WDSUB1-like 649 701 - -
Rops6g02719 717 ProSiteProfiles U-box domain profile. 647 717 IPR003613 GO:0004842|GO:0016567
Rops6g02719 717 SUPERFAMILY Protein kinase-like (PK-like) 348 626 IPR011009 -
Rops6g02719 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 704 IPR013083 -
Rops6g02719 717 Pfam Protein tyrosine and serine/threonine kinase 378 618 IPR001245 GO:0004672|GO:0006468
Rops6g02719 717 ProSiteProfiles Protein kinase domain profile. 373 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02719 717 SMART Ubox_2 651 717 IPR003613 GO:0004842|GO:0016567
Rops6g02719 717 Pfam U-box domain 648 701 IPR003613 GO:0004842|GO:0016567
Rops6g02719 717 Coils Coil 241 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02719 Rops-Chr6 48875019 48885519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02719 42 701 U-box Gene Family AT3G49060 45.259 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Rops6g02719 PK_Tyr_Ser-Thr 1.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02719 - - aprc:113871315 1021.92