Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02718 ATGCCAGTTGCAAAACTTACGGCCTCCAGCACTCCCAATTTCATGAAAACAGAAGATGGAACTGATTCTTTAGATACCATAATCAGACAAGCAATTGGAAAAGAACCTTTCCTTTCCTTTCCTAGGGCCGGTGACAGCCCAATACAGTGGATTCAATTACTTCATGCTTTAGATCAGCAAGAACTTCCAGGGTGGCCATTGCTCTCTCCTGTGAAGGTTCAGTTACAGAAGTGTGACAAGTGTTCTCGAGAGTTTTGCTCTCCCATTAACTATAGAAGACATATACGTGTACACCACCGGTTGAAGAAGCTTGACAAGGATTCTAAAAGAAATAGGGATCTTTTAGGGGCATATTGGGATAAGCTCTCTGTAGAAGAGGCAAAGGAAGTTGTGTCATTTAAGAATGTGATGCTGGAGGAAGTTCCAGGGTCTTCAATTTTAAAAGCTCTGTCAACTCTTAGAAAACAAGGATTTTCTTCTCTTCCTCTGCATTATCTGAGGGCGGGTTCTTCCCTTTTGGATATTATTCAATCCAGGCCCTCTAGTTTTCCTATATCTTCCCAAGAGTTGTTCAGTATCCTTGATGATTCCAGTGAAAAAACATTTTTATGTGGAACAGCAGTATCAATGCAAAGATATGTCTTTGATGGAGAGGCCGGAAAGATTGGTCTTGAACCAAAAAACCTTGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAATTGGTGAAGGCATGGCTCGCTGACAAGGATGCTGAAGCATTGCGATGCCAGAAGCTGCTGGTTGAGGAGGAGGAAGCTGCTCAGAAAAGACAAGCTGAGATTTTAGATAGGAAACGCCAGAAAAAGCTTAGACAGAAAGAACAGAAGGCGAGGGAACAACTTGAAGATGACACAGAAATTAAAGGGAACATCAGCAGCACAGGAGAGGATGTATCGCTAGCAGAAGCATCTTTGGCTGCATGTGGCTTTGAAGCACATAATACAGATATATTTGCAGATCATGCTTATTCACCACATGAAACTTATCACTGCCCAGACACCAACGAAGGTATAGATGGGGATGCACAGTCAGGGTATGATTGTGACACTGATCAGAATATAGAGCAACAGATATCTCAAGGATATAATAGCCGGCGCCCGATGGCTGCCAGACGGCAAGGGCTGCCAAAATCACAACGAACTGTAGCCAATGGTTTGTATGCAAGCCAGAATTCTCAAAAGTCAAAGCTTGGAGTCATTCATAAATATGGAACCAACCGTGATCAAAGGGCAGCTGCTATAGTTAACGGTAGTAAAGTTTGGAGCCGGAAGCCTAAACCAGAAACTAATGGGGTGGTTTTAAAAGCCAGACTACATAAAGAACCAGACAAAGGTAAGAATCATGAAGTTTTGATAGGATCTGTTTCTGTTACACTGGGCAATTGCAGCCAATCAGAGGGTAATCTCATGGCATCTCACGGGGACTGCTTGGTAGAAAATCTGGCTCAACAAAATACTTCTCAGGAGAAACCAATGAAACTTGATTCCTTCCAGGGAGGCAACAATCGGTTAACAGTTAAGTTTTGGAGGCCGGTTAGCCAGCATGGAACTAAAGATCCATTGCCACTTCAAAATGGTGGGACAGAAGCTGATGTAGTTAATGGAAAAGATAATCAAAATTTATCAGTTCAGAGTAGTTTAAGGTTGTGTAATACAGATGGAGGTGCTATTGGTTTTGGGAACAACAATTCCCGTATTGGGGCTAAAGTAGATTCAGAAAGCTTATTATCCAGCCATGCTGCAAAAGCCTTTCTTGCACAAAGATGGAAAGAAGCTATCTCATCAAACCATGTGAAATTGGTTGTTTCACCTGATTCTGAACTAGCAGCAGGTCAATCTTCTAATATGAACAGACGTGGCATTCTTGCAAATACAGAGAACCGGTTGCCTGCAACCTCCGGAGTTGCTAAATCCAAACCAAGAATGAAGCCTGAGAAGGGAGTGAAGACAAAGTACATTCCCAAACTAAAAGCAGCAACCTAG 2022 0.4253 MPVAKLTASSTPNFMKTEDGTDSLDTIIRQAIGKEPFLSFPRAGDSPIQWIQLLHALDQQELPGWPLLSPVKVQLQKCDKCSREFCSPINYRRHIRVHHRLKKLDKDSKRNRDLLGAYWDKLSVEEAKEVVSFKNVMLEEVPGSSILKALSTLRKQGFSSLPLHYLRAGSSLLDIIQSRPSSFPISSQELFSILDDSSEKTFLCGTAVSMQRYVFDGEAGKIGLEPKNLVACTSFLLEQKLVKAWLADKDAEALRCQKLLVEEEEAAQKRQAEILDRKRQKKLRQKEQKAREQLEDDTEIKGNISSTGEDVSLAEASLAACGFEAHNTDIFADHAYSPHETYHCPDTNEGIDGDAQSGYDCDTDQNIEQQISQGYNSRRPMAARRQGLPKSQRTVANGLYASQNSQKSKLGVIHKYGTNRDQRAAAIVNGSKVWSRKPKPETNGVVLKARLHKEPDKGKNHEVLIGSVSVTLGNCSQSEGNLMASHGDCLVENLAQQNTSQEKPMKLDSFQGGNNRLTVKFWRPVSQHGTKDPLPLQNGGTEADVVNGKDNQNLSVQSSLRLCNTDGGAIGFGNNNSRIGAKVDSESLLSSHAAKAFLAQRWKEAISSNHVKLVVSPDSELAAGQSSNMNRRGILANTENRLPATSGVAKSKPRMKPEKGVKTKYIPKLKAAT* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02718 673 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Rops6g02718 673 SMART c2h2final6 76 98 IPR013087 -
Rops6g02718 673 MobiDBLite consensus disorder prediction 645 673 - -
Rops6g02718 673 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Rops6g02718 673 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 671 - -
Rops6g02718 673 Coils Coil 275 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02718 Rops-Chr6 48868623 48875073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02718 18 668 C2H2 Transcription Factor Family AT4G25610 43.075 1.02e-154 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g02718 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02718 - - gmx:100799153 1046.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02718 6 48868623 48875073 Rops6g02718 6 48868623 48875073 ECH
Rops5g00911 5 17598039 17607182 Rops6g02718 6 48868623 48875073 PCT