Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02703 ATGAACAACAACAACAACAACAACAACAACAACAACAACAACCACCACCTCACAACCACCGCCACCACCCACCGCCACCTTCACCCTTCTCAACCTGTTTACCGAACCCAACAGCAACTACCTACAATTTTCCTTGACCCTTCTTCATCCCACATCGCTCAGCGCCAAACATCGTCAACCTTCATAGGGAAACGCACCCTCGCTGAATTTCAAACCCAGAACAACCTTAATAACCACAATAACCCACTACTTGCCAACCTTCTACTTCGTTCTGTAAAGCCTAGAACTTTCCGTCATGGGTCCCATCTTTCAACCATGGATTTTTCTACCTCTCTTCCTGAATTGTCCAATTCTTCGGCCTTTCGGTCACAGCGTTTGGGCATACCTCTTCTTTGCCCTAACCCCGTTGGTGTTGGTCTAACCAACGCTCAAACCCAATTACCCATGAACAATTCCATCCTCCAAAACTCGAATTTCCTGTATCAAAATCCCAATTTTGCCCAGGTTGTTCAGAACAGAGTGACAACAACCACCCATGAACCAGAGAGGAAGATGATTGACCATCGCCTTCAGGAGTTGGAAAAACAGCTTCTAGAAGATAATGATGATGAAGGAGGAGATGCTGTTTCTGTTATTACAAACTCTGAATGGTCAGAGACAATTCAAAGCTTGATTACTCCCGTGCAGAACCCGACCCAGAAACCCGTTTCGTCTTCACCCACTTCCTCAACGACGTCGTCTAACTCTTCTTCTTCCTCTGTGGCTTCCCCTGCTTCAAGCTGTTCAAAACAGTCGTTAATGGAGGCCGCATCGGCAATTTCCGAAGGGAAATTGGAAGTTGCGTCGGGGATCCTTACCCGTTTGGGTCAGGCTTCGAACCCGAATGGGAATTCGGATCAGAGGTTGACCAATTGCATGGTTTCCGCACTGAAATCGCGCTTGAACCAGGTTGAAAACCCACCTCCGGTGGTAGAACTGTTCACAAGGGAACACGCTGAGTCAACTCAGTTGCTTTTTGAACACTCACTTTACTTCCAACTCGCTTTCATGACTGCCAACCTCGCAATCCTCGAAGCCGCATTTGATGACACAACCGATAACATGAATCTCTGTGTTGTGGATTTCGATATTGGTAATGGAAGGCAATACGCGAGTCTTCTTCGTGAGCTTTCTGCGCGTCTATACGGAAAACCGGGGACGGTGAAGATCACGGCGGTGGCGGAGAACGGTGCCGACGAGAGGTTGAAGACGGTGGGTGAGATGCTGAGTGGACAAGCGGAGAGTCTCGGGATCGGGTTCGAATTCAAAGCGGTGACACACAGACTCGCTGAGTTGACTCGTGAGTCGTTAGGTTGCGACCCGGACGAGTCGTTGGCTGTGAATTTCGCCTTCAAACTTCACAGAATGCCCGACGAGAGCGTCTCGACGGAGAACCCACGCGACGAACTTCTCCGGCGCGTGAAGGCACTCGCGCCAAGCGTGGTGACTTTGGTGGAGCAAGAGATGAACACCAATACGGCGCCGTTTGTGGCACGTGTCGCCGAGTCATGGTCTTATTATGGCGCGCTGTTTGACTCGTTCGATATGGTGCGGGGTAACTCGGAGCGAGTCAAGATTGAGGAGGGACTGAGTCGGAAGCTGGGTAACTCGATCGCTTGCGAAGGGAGGGATCGTGTGGAACGGTGCGAGGTGTTTGGGAAATGGCGCGCACGCATGAGCATGGCTGGTTTCAGGTTAAACCCGGTGAGTCAGCGCGTGGCCGAGTCAATCAAAGCGCGACTCGGTCCTGTTAGCCGAGTCACTGTGAAAGAAGAGAACGGTGGGATTTGCTTTGGCTGGGTGGGAAGATCTCTCACCGTTGCATCTGCTTGGCGTTAA 1878 0.5085 MNNNNNNNNNNNNNHHLTTTATTHRHLHPSQPVYRTQQQLPTIFLDPSSSHIAQRQTSSTFIGKRTLAEFQTQNNLNNHNNPLLANLLLRSVKPRTFRHGSHLSTMDFSTSLPELSNSSAFRSQRLGIPLLCPNPVGVGLTNAQTQLPMNNSILQNSNFLYQNPNFAQVVQNRVTTTTHEPERKMIDHRLQELEKQLLEDNDDEGGDAVSVITNSEWSETIQSLITPVQNPTQKPVSSSPTSSTTSSNSSSSSVASPASSCSKQSLMEAASAISEGKLEVASGILTRLGQASNPNGNSDQRLTNCMVSALKSRLNQVENPPPVVELFTREHAESTQLLFEHSLYFQLAFMTANLAILEAAFDDTTDNMNLCVVDFDIGNGRQYASLLRELSARLYGKPGTVKITAVAENGADERLKTVGEMLSGQAESLGIGFEFKAVTHRLAELTRESLGCDPDESLAVNFAFKLHRMPDESVSTENPRDELLRRVKALAPSVVTLVEQEMNTNTAPFVARVAESWSYYGALFDSFDMVRGNSERVKIEEGLSRKLGNSIACEGRDRVERCEVFGKWRARMSMAGFRLNPVSQRVAESIKARLGPVSRVTVKEENGGICFGWVGRSLTVASAWR* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02703 625 Pfam GRAS domain family 263 625 IPR005202 -
Rops6g02703 625 ProSiteProfiles GRAS family profile. 253 625 IPR005202 -
Rops6g02703 625 MobiDBLite consensus disorder prediction 226 260 - -
Rops6g02703 625 MobiDBLite consensus disorder prediction 1 28 - -
Rops6g02703 625 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 239 615 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02703 Rops-Chr6 48627971 48630187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02703 31 625 GRAS Transcription Factor Family AT5G52510 49.131 2.98e-158 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops6g02703 GRAS 3.5e-99 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02703 - - tpra:123914170 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02703 6 48627971 48630187 Rops6g02703 6 48627971 48630187 ECH
Rops5g00938 5 18185715 18188094 Rops6g02703 6 48627971 48630187 PCT