Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02683 ATGGTTTCTAAAAACTCGAACCTCTCAGAGGCTATGTATTTGGATTCCAATGGCATGGCTTTGCCTGGTATAGTTACCTTTGCTGATTCGGTGGAGGACCCCACCAAGAAGACCAGGAAGCCATACACTATCACCAAGTCTAGGGAGAGTTGGACTGAACCTGAGCATGACAAGTTCCTTGAAGCTCTTCAACTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAAACAGCTATCCAGATACGTAGCCATGCACAGAAATACTTTTTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCTCCACCCAGACCAAAACGAAAAGCTGCTCATCCATATCCTCAGAAAGCTTCCAAAAATGCTCCACCAGTACTCTCACAAGTATCAGGATCCTTTCAATCTTCATCTGCTTTGCTTGAACCTGGATCCATCCTAAAGCATGATTCTTCACCAATGCTTGAAACTCCTATTATTAACACTGCAGTGTCTTCCTGGTCAAACAAGAATTTGCAGAAAACAACCAATGGATTGCATGGACAAAAAGTGAATAATTGTTGCAGTAGCAGTGAATGCACTCCTAGAGGAAGGCTGGTTGGTGAATCTAATAGTCAAGGGAATAATAACCTTCCATTGAGAGTTCTTCCGGATTTTACACAAGTATACAGCTTCATTGGCAGTGTATTTGACCCAAATGTAACTGGACATCTACAGAAACTAAAAAGGATGGACCCTATAGATGTTGAGACGGTGCTACTGTTGATGAGAAACCTGTCTATCAATTTAACAAGCCCAGATTTTGAGGATCATAGAAGGCTGTTTGCATCATATGAAGTGGAATCCGAGACAGTTAACTATATCAATGCTGATCGACCCATGCATGATGAGCAATTGAAGAGTGCTACTTAG 921 0.4159 MVSKNSNLSEAMYLDSNGMALPGIVTFADSVEDPTKKTRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTAIQIRSHAQKYFLKVQKSGTSEHLPPPRPKRKAAHPYPQKASKNAPPVLSQVSGSFQSSSALLEPGSILKHDSSPMLETPIINTAVSSWSNKNLQKTTNGLHGQKVNNCCSSSECTPRGRLVGESNSQGNNNLPLRVLPDFTQVYSFIGSVFDPNVTGHLQKLKRMDPIDVETVLLLMRNLSINLTSPDFEDHRRLFASYEVESETVNYINADRPMHDEQLKSAT* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02683 306 FunFam protein REVEILLE 6 isoform X1 50 98 - -
Rops6g02683 306 PANTHER SWI/SNF COMPLEX-RELATED 31 267 - -
Rops6g02683 306 SMART sant 47 95 IPR001005 -
Rops6g02683 306 Pfam Myb-like DNA-binding domain 48 93 IPR001005 -
Rops6g02683 306 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Rops6g02683 306 ProSiteProfiles SANT domain profile. 46 97 IPR017884 -
Rops6g02683 306 ProSiteProfiles Myb-like domain profile. 43 93 IPR001005 -
Rops6g02683 306 CDD SANT 50 93 IPR001005 -
Rops6g02683 306 Gene3D - 51 98 - -
Rops6g02683 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 97 IPR017930 -
Rops6g02683 306 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 95 IPR006447 GO:0003677
Rops6g02683 306 MobiDBLite consensus disorder prediction 98 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02683 Rops-Chr6 48213077 48217324 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops6g02683 Myb_DNA-binding 1.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02683 - - gmx:100794389 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02683 6 48213077 48217324 Rops6g02683 6 48213077 48217324 ECH