Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02676 ATGATGGCTGAGGACTGGGATCTCTTCGCCGTCGTGAGAAGCTGCCAATCAGCCACCAATACTGCCACAACAAAAAATCTACCTACAACCGCCAATAGTAATACTATACCGTCTTCCTTGGCTGCTTCTACTGTCAAGGAAGAAGAATTTGAGGCATTTTCTTTTCCCAATATAGGGCAACCCATAACCAATGAGTTTCAAGAGCTAAACGAATTGTTCACATCCTTTAACCCCACCACCAACACCACTACAACTAGTGGTGGTGGTATCAATCCCAATTCCTCAGATTTTGCAGGATGTATTATACAACAAGAAAGGCCTGTGCTAGCCCCTACTACCCCCACTTCCATTTGGCCCCATTTTGTGCCAAAACTCTCCACTTCCAGATCCCATAACGAACAACAACAGCAACCACAGCATGTACAAAAACAACTACAAGTAGTTCACAAACAGGAATTTCAAGTACCCCAAATCAGTTCTACTTTAGTTTTACCAAACGCACAACCTCAAACACCCCGATCAAGAAAAAGAAAAAGCCAACAGAAGAAAATGGTGTGTCATGTTACTGCAGATAATCTCTCAGCAGATTTATGGGCATGGCGTAAATATGGACAAAAACCCATAAAGGGTTCTCCATATCCAAGGAACTATTACAGGTGTAGCAGCTCCAAAGGTTGTTCCGCGCGAAAGCAAGTTGAACAGAGCAACGCTGAACCCGACACGTTCATCGTAACGTACACCGGAGACCACTCACATCCCAGACCTACCCACCGGAACTCCCTTGCCGGAACTACGAGGACCAAGTCTCCGGCCATGCAACCACCGTCCTACCAAGCCAACATCACCGCTTCTTCTTCTCCATCTTCATCCTCACCGGTGACAACGTCGACAGACCCACCGGAAAACGACTTGGCAGAAGAGGAAGGGGATCCAGACCCGGAAATGGAAACCGACGAGGATATCGAAGATGATGCTGACGTTCCACCACCCACCGGGAATGAATCTTTTTGA 1011 0.4688 MMAEDWDLFAVVRSCQSATNTATTKNLPTTANSNTIPSSLAASTVKEEEFEAFSFPNIGQPITNEFQELNELFTSFNPTTNTTTTSGGGINPNSSDFAGCIIQQERPVLAPTTPTSIWPHFVPKLSTSRSHNEQQQQPQHVQKQLQVVHKQEFQVPQISSTLVLPNAQPQTPRSRKRKSQQKKMVCHVTADNLSADLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCSARKQVEQSNAEPDTFIVTYTGDHSHPRPTHRNSLAGTTRTKSPAMQPPSYQANITASSSPSSSSPVTTSTDPPENDLAEEEGDPDPEMETDEDIEDDADVPPPTGNESF* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02676 336 SUPERFAMILY WRKY DNA-binding domain 189 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops6g02676 336 Gene3D WRKY domain 177 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops6g02676 336 Pfam WRKY DNA -binding domain 196 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops6g02676 336 MobiDBLite consensus disorder prediction 301 327 - -
Rops6g02676 336 MobiDBLite consensus disorder prediction 257 300 - -
Rops6g02676 336 MobiDBLite consensus disorder prediction 159 184 - -
Rops6g02676 336 FunFam WRKY transcription factor 22 177 248 - -
Rops6g02676 336 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 312 IPR044810 GO:0003700
Rops6g02676 336 ProSiteProfiles WRKY domain profile. 189 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops6g02676 336 SMART WRKY_cls 194 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops6g02676 336 MobiDBLite consensus disorder prediction 159 174 - -
Rops6g02676 336 MobiDBLite consensus disorder prediction 244 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02676 Rops-Chr6 48144927 48146228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02676 173 274 WRKY Transcription Factor Family AT5G52830 79.412 2.23e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops6g02676 WRKY 4.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02676 - - aprc:113871802 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01056 5 21546642 21548379 Rops6g02676 6 48144927 48146228 ECH
Rops4g01545 4 38553180 38554666 Rops6g02676 6 48144927 48146228 ECH
Rops8g01021 8 21503416 21505023 Rops6g02676 6 48144927 48146228 ECH
Rops4g02108 4 47511521 47516886 Rops6g02676 6 48144927 48146228 ECH
Rops6g02676 6 48144927 48146228 Rops6g02676 6 48144927 48146228 ECH
Rops5g01056 5 21546642 21548379 Rops6g02676 6 48144927 48146228 PCT