Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02673 ATGGCAGAACAGCCACCACCACCGCCACCAAAAACTTACAAACTAACAGCTACTTCAATCTCCTACACCAAATCAACATCATCCACAAACACCACCACTTCACCATTCTTCATCTTCAAACATTGTACACCAAATCCACCTACCCATATCCTCAAAGATGTCTCCTTCACTGCTTATCCCTCTGAGATCCTCGCCATTGTTGGTCCAAGTGGTGCAGGAAAATCTACTCTTCTAGACATTCTATCAGCTAGAAGATTACCCTCAAATGGCACTCTTTCCCTTAACTCTTCCCCTCTTAATCCCTCCTCATTTCGAAAACTCTCTTCCTATGTCCCTCAACATGATGCATGCCTTCCTTTGCTCACTGTTTCTGAGACATTTGCATTCTCTGCTTGCCTTCTCAAGCCTAAGACTTCTGATATTGCAACCATTGTTTCATCTCTTCTCAATGAACTGAGGTTGACACATTTGGCTAACACAAGGCTAGCTCATGGCTTATCTGGTGGAGAACGTAGAAGGGTCTCTATAGGTCTTAGTCTTCTTCATGATCCAGCTGTTTTGCTTCTTGATGAACCCACTTCTGGCCTTGATAGTACCTCTGCTTTCAAAGTCATGCAAATTCTCAAATCAATTTGTGTTTCTCGTCATAGGACTATTGTTCTCTCCATTCATCAACCAAGCTTTAAGATCCTCTCTTGCATTGATAGAATCTTGCTGCTATCTAAGGGAACTGTGGTTCATCATGGAAGCCTTGCTTCACTTCAAGCATTCTTGCACTCAAATGGCTTCACTGTCCCTCATCAGCTCAATGCCTTGGAATATACCATGGAAATACTAAACCAATTAAATGAGCTTAAACCCATGATTACTCTCCCTGAATCGCCAGAAAGTTCTACAAGTTATTCTCTATCTAACAATAGAACCAAGACCAAAGAGATCAGGTACATGAGCTCTAGGATTCATGAAATTTGTGCCCTTTATAGCAGGTTTTGGAAGATCATTTACAGAACTAGGCAACTGCTTTTGACAAACACCGCAGAAGCACTTGTTGTTGGTCTTGTTTTAGGAACAATTTATATCAATATTGGGTTTGATAAAGAAGGTATTGAGAAAAGGTTTGGTCTATTTGCCTTCACTCTTACATTCCTCCTATCCTCCACTACTGAGACACTTCCCATCTTTATCAATGAGAGGCCAATCCTGCTAAGAGAAACTTCAAGTGGGGTTTATAGGCTATCATCTTATCTCATAGCAAATACACTTGTTTTCTTGCCATACTTGCTGGTAGTTGCTGTAATATACTCTATCCCAGTTTACTTCTTAGTGGGGCTTTGTGCTACTTGGCTATCTTTTGCTTATTTTGTTTTGGTCATATGGATCATAGTTCTAATGGCAAACTCATTTGTCCTCTTCTTGAGCTCTCTTGCACCAAACTACATTGCTGGGACTTCACTCTTGACAGTACTTCTTGCAGCATTTTTTCTCTTCTCTGGCTATTTTATCTCCAAGGATAGCTTACCCAAATACTGGCTCTTCATGTACTTCTTCTCTATGTACAAATACGCTCTTGATGCACTTCTTATCAACGAGTACTCTTGTTTAGTTACAAGGTGTTTGATATGGTACCGAGAGAATCAGGAGTGCATGGTCACTGGGGGTGATGTGTTACAGAAAAGAGGGCTCCATGAGACAGAAAGATGGACCAACGTGTACTTCTTGATTGGTTTCTTTGTGTTTTATCGTGTGCTTTGCTTCTTGGTTTTGATTAGGAGGGTTTCAAGATCCAAAACTTGA 1794 0.4086 MAEQPPPPPPKTYKLTATSISYTKSTSSTNTTTSPFFIFKHCTPNPPTHILKDVSFTAYPSEILAIVGPSGAGKSTLLDILSARRLPSNGTLSLNSSPLNPSSFRKLSSYVPQHDACLPLLTVSETFAFSACLLKPKTSDIATIVSSLLNELRLTHLANTRLAHGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFKVMQILKSICVSRHRTIVLSIHQPSFKILSCIDRILLLSKGTVVHHGSLASLQAFLHSNGFTVPHQLNALEYTMEILNQLNELKPMITLPESPESSTSYSLSNNRTKTKEIRYMSSRIHEICALYSRFWKIIYRTRQLLLTNTAEALVVGLVLGTIYINIGFDKEGIEKRFGLFAFTLTFLLSSTTETLPIFINERPILLRETSSGVYRLSSYLIANTLVFLPYLLVVAVIYSIPVYFLVGLCATWLSFAYFVLVIWIIVLMANSFVLFLSSLAPNYIAGTSLLTVLLAAFFLFSGYFISKDSLPKYWLFMYFFSMYKYALDALLINEYSCLVTRCLIWYRENQECMVTGGDVLQKRGLHETERWTNVYFLIGFFVFYRVLCFLVLIRRVSRSKT* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02673 597 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 33 267 IPR003439 GO:0005524
Rops6g02673 597 FunFam ATP-binding cassette transporter 40 260 - -
Rops6g02673 597 Pfam ABC-2 type transporter 322 531 IPR013525 GO:0016020|GO:0140359
Rops6g02673 597 Pfam ABC-2 type transporter 224 285 IPR043926 GO:0140359
Rops6g02673 597 ProSitePatterns ABC transporters family signature. 166 180 IPR017871 GO:0005524|GO:0016887
Rops6g02673 597 Pfam ABC transporter 51 194 IPR003439 GO:0005524
Rops6g02673 597 SMART AAA_5 60 244 IPR003593 GO:0016887
Rops6g02673 597 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 13 582 - -
Rops6g02673 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 258 IPR027417 -
Rops6g02673 597 Gene3D - 39 287 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02673 Rops-Chr6 48113483 48115460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02673 46 261 Calmodulin-binding Proteins AT2G36910 28.571 1.06e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02673 K05681 - qsu:112007275 903.664