Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02667 ATGGAACAGAAGCAACTCGTGTTGTCTGCATTGAGCGTTGGGGTTGGTTTGGGTGTGGGGCTGGGATTTAGCACAAAACAGGCTTTGCAAAAATGGGTTGGAGAGGATACTCAGTCTAGTGAGAGTTTAGGGGAGCAGATTGTGCTGGAGCTCAAGAACCAAGTGGTTGACTGGAAGGACATCAAAACCACATTTGATGAGTTTCCTTATTACTTAAGTGAAAGAATCCGATTTTTATTGAAAATTGCTGGATATGTTCATTTAAAACAAGAACACATTTCCAAGCACATGAGGAACTTTTCACCGGCAAGCAGGGCTATTTTGCTTTTTGGACCTGCAGAACCTTATCAACAAATGCTTGCCAGAGCTTTAGCACGTTATTTTGAGTCAAAGTTACTGTTGCTAGATATTACTGACTTCTCTTTGAAGATGCAGAGTAAATACGGATGTTCTAGAAAAGAACAATATGTTAAAAGGTCCATATCTGAGGTAACTTTGGAGTGCATATCTGGTTTGTTTGGTTCTGGCAAAACTAAAGGTACTCTACGACGACAAAGTAGTGGAATTGAAGATTCCACTAATCTTCCAAAGCTTTTTAGGAATGCCTTTACTGCATCTGATATGAGTAGCACTTCCCAACACGGACCATCAGACCCAGCTCCTTTGAAGTGCACAAACCGCTTTTGCTTTGATGAAAAACTCTTCGTGCAGTCTCTTTACAAGGTCTTGGTTTCTATATCAGAAACTAGTTCTATTATTTTGTACATCAAGGATGTTGAGAAGCTCTTTCTTCAATCACCAAGGATATACAATTTATTCCAAAAGCTAATAAAGAAACTTTTGGGGTCAGTGTTGATACTTGGTTCCTTTATCTATAATTCAGAAGATGATTGTACAGAAGCTGATGAAAAGCTCACTATGTTATTCCCTTCCAAGATTGAGATCAAACCACCAAAAGATGAGACTCATCTTGGGAACTGGAAAACCCAACTAGAAGAGGAAATGAAAATATTTCAGTTTAAAGATAACAAAAACCACATTGTTGAAGTACTTGTCGCAAATGACATTGCTTGTGATGACTTGAATGCAATCTGCCATGCTGACACCATGCTACTCAGTAATTATATTGAAGAGATTGTGGTATATGCAATTTCTTACCACCTGATGGACACCAAATATCCAGAATACCGAAATGGAAAACTAATCATATCAGCCAAGAGTTTGTTGCAGGTATTGAGTATGTACCAGGAAGGAGAATCGAACAAGGAAGTTCTTCCTGACAATGAGTTTGAGGAGCACATAAGATCAGAGGTTATACCTGCAAAAGAGATAAAGGTTACATTTGCAGATATTGGTGCATTGGATGATATTAAAGAATCACTTCATGAAGTGGTCATGCTTCCCCTTAGAAGACCAGACCTATTCAAAGGTGGGCTTCTAAAGCCTTGTAGTGCAAAGATTGCCCCAACTATTATTTTTGTTGATGAGGTTGATAGCATGCTTGGACAACGATCTATAGCTGGGGAGCATGAGGCAATGAGAAAGATTAAAAATGAATTCATGTCCCATTGGGATGGGCTATTGTCAAAACTTGATGAGCAAATTGTAGTTCTTGCTGCCACCAACAGGCCATTTGACCTTGATGAAGCAATTATAAGACGATTTCAACGCAGGATCATGGTTGGTCTTCCATCTGCGGAGAGCAGAGAAATGATCTTGAAAACTCTCCTAGCTAAGGAAAAATATGAAAATATAGACTTCAAGGAACTTTCAACTATGACAGAAGGATATACTGGAAGTGATCTTAAGAATTTGTGTATAGCTGCAACTTTTCGACCTATTAAGGAGCTAATACATCAAGAGAGGGTAAAAGAAATGGAAAAGAAGAAAAAGGAGGCAGAAGTTCAAATCTCAATAGAATCTTCTAACACTTCAGAAGATAAAGAAGACCAAGTGATAACCTTGAGGCCTTTAAACATGGAAGACATGAGACAGGCAAAGAGTAAGGTGGCTGCGAGTTTTGCTGCAGAAGGATCAATGATGAGTGAGCTGAAGCAGTGGAATGATTTGTTTGGAGAAGGAGGTTCAAGGAAGAAAATGCAGCTCACTTATTTCCTTTAG 2121 0.3899 MEQKQLVLSALSVGVGLGVGLGFSTKQALQKWVGEDTQSSESLGEQIVLELKNQVVDWKDIKTTFDEFPYYLSERIRFLLKIAGYVHLKQEHISKHMRNFSPASRAILLFGPAEPYQQMLARALARYFESKLLLLDITDFSLKMQSKYGCSRKEQYVKRSISEVTLECISGLFGSGKTKGTLRRQSSGIEDSTNLPKLFRNAFTASDMSSTSQHGPSDPAPLKCTNRFCFDEKLFVQSLYKVLVSISETSSIILYIKDVEKLFLQSPRIYNLFQKLIKKLLGSVLILGSFIYNSEDDCTEADEKLTMLFPSKIEIKPPKDETHLGNWKTQLEEEMKIFQFKDNKNHIVEVLVANDIACDDLNAICHADTMLLSNYIEEIVVYAISYHLMDTKYPEYRNGKLIISAKSLLQVLSMYQEGESNKEVLPDNEFEEHIRSEVIPAKEIKVTFADIGALDDIKESLHEVVMLPLRRPDLFKGGLLKPCSAKIAPTIIFVDEVDSMLGQRSIAGEHEAMRKIKNEFMSHWDGLLSKLDEQIVVLAATNRPFDLDEAIIRRFQRRIMVGLPSAESREMILKTLLAKEKYENIDFKELSTMTEGYTGSDLKNLCIAATFRPIKELIHQERVKEMEKKKKEAEVQISIESSNTSEDKEDQVITLRPLNMEDMRQAKSKVAASFAAEGSMMSELKQWNDLFGEGGSRKKMQLTYFL* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02667 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 442 611 IPR027417 -
Rops6g02667 706 Gene3D - 565 671 - -
Rops6g02667 706 Gene3D - 418 485 IPR027417 -
Rops6g02667 706 Gene3D - 486 564 IPR027417 -
Rops6g02667 706 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 485 705 - -
Rops6g02667 706 ProSitePatterns AAA-protein family signature. 535 554 IPR003960 GO:0005524|GO:0016887
Rops6g02667 706 Pfam ATPase family associated with various cellular activities (AAA) 486 562 IPR003959 GO:0005524|GO:0016887
Rops6g02667 706 Coils Coil 616 643 - -
Rops6g02667 706 Pfam AAA+ lid domain 584 627 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02667 Rops-Chr6 47953558 47963026 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02667 488 669 Calmodulin-binding Proteins AT3G56690 32.632 3.48e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02667 - - csv:101216426 726.087