Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02642 ATGCTCTTCGCAAGAGCATCCTCTTATTTGAAGGACAACGCTCTGGCAAACTCCCCGTCGATCAGCGTCTCCGATGCGCGTAGAGACTCTGCATTGCACGACAGCGCCACTGCCGGAAAGGAGCAAAAGCAGCGTCCTTTTGTCGAGGAGGATCAGGAACACCAAAGTCTCCGCCATGGCTCTGCTATTAAGAAGCTCCAGAGTGGTGTGAACAAGCTTGCGGATCTGGTTGGGGTTACTCTTGGTCCTAAAGGAAGGAATGTTGTTCTCGAAAGCAAGAACAAGCAAGATGAAATGGTTTTAGCTGATATGCATGTTAAACCAGGCCAAGCAGCGGACTATTGCCCAAGAGAGGCCTTAAGACGAGTTTCTAAAATTCTGAAAGATGAATTTGACTTGGTATGTGGCAGAGCTTGTCTTATTTGTGAAGTATTATGGTGTTTAACTTATAGTCTACTTCAAGTGAAATTAATTGGAAAGCTGCAAGATGGTACTATCTTTTTGAAAAAGGGCCATGACGATGAAGAGGAGCTGTTTGAATTCAAAACAGATGAGGAGCAAGTAATTGATGGGCTTGATCGAGCTGTTTTGACTATGAAGAAGGGTGAGGTGGCATTGTTGACTATTGCACCTGAATATGCTTTCGGTTCATCAGAGTCTCGGCAAGAATTGGCAGTGGTTCCTCCTAACTCCACCGTGTATTACGAGGTTGAGCTAGTATCATTTGAGAAGGTTGTGGGATGGCCACCAATCCGTTCTTTCAGGAAGAATTCAATGGCCACTCAGCCTCAAAAGAATGATGATGATGCAGAAGCCAAGTCTGGATGCCTTTATGTAAAAGTCAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGATCTCAAAATTTTTGGCACTTACAGGGAGCTATCTTCAGCACTGGAAAAGATGTTTAGTTGTTTTACAATGAGTCAATGTGACTCTCATGGAGTTTCTAGTAGAGATAAGTTGAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTGCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCATGGGAGCAGCATGCGGAGGAACAGGTTGTTGACATTGATCTTTGGAGATCTGGCAATGAACTTGCTGCTGTAGAATATTTTGAAAAGATATTTACAAGTTCTATAAGCTGGTTGAGGTACCTTGTTGTTCCTTTCCCAAGTAGAAACGTTTGTTGGTGA 1245 0.4369 MLFARASSYLKDNALANSPSISVSDARRDSALHDSATAGKEQKQRPFVEEDQEHQSLRHGSAIKKLQSGVNKLADLVGVTLGPKGRNVVLESKNKQDEMVLADMHVKPGQAADYCPREALRRVSKILKDEFDLVCGRACLICEVLWCLTYSLLQVKLIGKLQDGTIFLKKGHDDEEELFEFKTDEEQVIDGLDRAVLTMKKGEVALLTIAPEYAFGSSESRQELAVVPPNSTVYYEVELVSFEKVVGWPPIRSFRKNSMATQPQKNDDDAEAKSGCLYVKVSMDGAPYLRKVDLKIFGTYRELSSALEKMFSCFTMSQCDSHGVSSRDKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEQHAEEQVVDIDLWRSGNELAAVEYFEKIFTSSISWLRYLVVPFPSRNVCW* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02642 414 ProSiteProfiles PB1 domain profile. 276 378 IPR000270 GO:0005515
Rops6g02642 414 SUPERFAMILY GroEL equatorial domain-like 52 95 IPR027413 -
Rops6g02642 414 FunFam Peptidylprolyl isomerase 149 245 - -
Rops6g02642 414 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 152 240 IPR001179 GO:0003755
Rops6g02642 414 Gene3D - 39 112 IPR027413 -
Rops6g02642 414 MobiDBLite consensus disorder prediction 27 54 - -
Rops6g02642 414 Gene3D - 270 384 - -
Rops6g02642 414 Pfam AUX/IAA family 238 365 IPR033389 -
Rops6g02642 414 MobiDBLite consensus disorder prediction 17 54 - -
Rops6g02642 414 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 150 243 IPR001179 GO:0003755
Rops6g02642 414 SUPERFAMILY FKBP-like 152 245 - -
Rops6g02642 414 Gene3D - 148 244 IPR046357 GO:0003755
Rops6g02642 414 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 218 378 IPR003311 GO:0005634|GO:0006355
Rops6g02642 414 SUPERFAMILY CAD & PB1 domains 273 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02642 Rops-Chr6 47476120 47486418 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02642 155 291 Calmodulin-binding Proteins AT3G25230 33.103 3.03e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops6g02642 AUX_IAA 3.6e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02642 K14484 - gmx:100803754 233.802