Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops6g02627 | ATGGCAGATCTTGTTAACTACAGGAATGCCGACCGTGAAATCGAGCAGGCATTGATTGCTTTGAAAAAGGGTGCTCAACTGCTTAAATATCGTCGGAAGGGAAAGCCTAAGTTTTGTCCATTTAGCCTTTCCAGTGATGAGTTGTCTTTAATCTGGATTTCAAGTAGTGGAGAAAAAAGTCTGAAGCTATCTTCTGTCTCTAGAATTATTCCTGGACAAAGAACTCCTGTTTTCCAACGATATCCGCGTCCTGAAAAGGACTATTTGTCTTTTTCACTTATTTATAACCACGGGAAGCGATCCCTTGATTTGATTTGTAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGTCTCAAGGCACTGATATCTTCAGGTCAAGGTGGGCGGTCCAAAATTGATGGATGGAGTGATGGAGGCCTATATCTTGACGACAGTAGAGACTTGACATCAAACAGTCCTAGTGAAAGTTCAGTTAGTGCTTCACAGGACATCAGTTCTCCTGACGTTTCTGTTAGTGTGCCAAATACTTCTCCACAGTCCTTTCAGCCTGAGAATACCTTAAATTTTGAAAGGTCACATGCACCATCAAACCCATCAAATATGCAAGTGAAAGGATCTGGTTCAGATGTTTTTCGTGTTAGTGTCTCAAGTGCCCCCAGCACATCTAGTCATGGGTCTGCACCAGATGATTATGATGCTCTTGGGGATGTATACATATGGGGGGAGGTTATCTGTGAGAATGTTGTGAAAGTTGGTGCTGATAAAAATGTCAGTTATTTTAGCCCGAGGGCAGATATTCTCCTCCCCAGGCCGCTGGAGTCCAATGTGGTCTTAGATGTACTTCAAATAGCATGTGGTGTTAAGCATGCTGCTCTAGTTACAAGGCAAGGTGAACTTTTTACATGGGGTGAAGAATCTGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCATTGGCTTCTACAACTGTTGATTTTGTTGCTTGTGGGGAGTTCCATACATGTGCTGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCCGGTCTTCTTGGTCATGGCACAGATGTTAGTCATTGGATACCGAAGAGAATTGCTGGTCCACTAGAGGGGCTTCAAGTTGCTGTAGTCACTTGTGGTCCATGGCACACAGCTTTGATAACTTCAACTGGGCAGCTCTTTACATTTGGTGATGGAACATTTGGTGTCCTGGGCCATGGAGATAGGGAAAATATTTCATATCCTAGAGAAGTAGAATCCTTGTCCGGGTTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCTGCTGTCGTAGAGGTTATTGTGACACAATCCAGTGCAAGTGTATCATCCGGTAAATTGTTTACTTGGGGTGATGGAGATAAAAATCGCCTTGGACATGGAGACAAGGAGGCCCGGCTTGAACCAACTTGCGTACCTTCACTTATCGATTACAATTTTCATAGAATTGCTTGTGGGCACAGTTTGACCGTAGGCCTGACGACATCCGGACATGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTCGGGAATCCCCAGTTTGACGGGAAGCTGCCCTGTTTGGTTGAAGACAAGCTTGCTGGAGAATCCGTCGAAGAAATTGCATGTGGGGCTTATCATGTTGCTGTTTTAACATCCAAAAATGAAGTTTATACTTGGGGGAAGGGTGCGAATGGGAGATTGGGTCATGGAGATGTTGAAGATAGAAAAGCACCAACTCTGGTGGAAGCCTTGAAGGATAGACATGTGAAATATATCGCATGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAATGGGTATCTGGTGCTGAGCAGTCTCAATGCTCTGCTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGGCACAACTGTTATAATTGTGGACTTGTGCACTGTCATTCATGCAGTTCAAGGAAAGCATTAAGAGCTGCCATGGCTCCTAATCCTGGGAAGCCATATCGTGTTTGTGATTCTTGTTATGCGAAATTGAATAAGGTTACAGAATCTAGCAATAATAATCGGAGGAATGCTATGCCTCGTTTGTCAGGTGAAAATAAGGACAGATTAGAAAAGTCTGAGCTAAGATTGCCCAAGGCAGCAGTGCCCTCTAATATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAACAGGGGAAGAAGGCTGATACATTCTCTCTGGTTCGCACCTCACAAGCACCGTCTTTGCTACAGCTGAAAGATGTAGTCTTGTCTACTGCTATTGATCTGAAACGCACCGTTCCTAGACCTGTTCTTGCACCATCTGGAGTGAGTTCCAGGTCTGTGTCCCCTTTCTCTAGAAGACCGAGCCCCCCTCGTTCTGCTACACCTATCCCAACAACATCAGGACTTTCCTTCTCTAAAAGTATTGCTGATAGTTTGAAGAAAACAAACGAACTTTTGAATCAAGAAGTGCTGAAGCTACGTTCTCAGGTTGAGACCCTGAGACAGAGGTGTGAACTACAAGAATTAGAGCTTCAAAGGTCAGCAAAAAAGACTCAGGAAGCTATGGCACTAGCTGCTGAGGAATCTGCCAAATCTAAGGCTGCAAAAGAAGTTATAAAGTCACTTACAGCACAGCTCAAAGATCTGGCTGAGAGGCTTCCTCCTGGTGTTTATGATGCTGAGAACATCAGACCAGCTTACCTGCCAAATGGTCTGGAGCCAAATGGCATCCACTATCCGGACTTCAATGGGGAGCGCCATTCCAGGGCAGAGTCAATCAGCAGCTCTAGCTTGGCTTCCATAGGACTTGAATCTTCTCTGATAAATAGAACTGAGGGGAATTTACCTGGAAGCTATGGAACCAATCCTTACCGGCCAAACCGGGGGCCTGTGACCACTAACGGGACAGAAGATTACCCAGATGATAAATTGCCAAATGGAAGTGGCATGATTCAGGCAAGCAGCAGTAGTGTGTCAGATATTGTTGATGGTAGGGATTCTGGGAATTTACAAGATGATGAGAGTTTGAGATCATCAAGGAGTGGTGTAATGCCTGCAAATGGTAACCAAATTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTATATAACACTGGTTGCCCTGCGTGATGGAACAAGAGATCTAAAACGAGTGCGCTTCAGCCGGAGAAGATTTGGAGAGCACCAAGCAGAGAATTGGTGGTCAGAGAACCGTGAGAAGGTATATGAAAGGTACAATGTTCGTAGCACAGACAAATCTTCAAGCCAAGCAGCACGTAGGGCTGATGGTGCTGGGTCACCTGTTCTATAA | 3360 | 0.4491 | MADLVNYRNADREIEQALIALKKGAQLLKYRRKGKPKFCPFSLSSDELSLIWISSSGEKSLKLSSVSRIIPGQRTPVFQRYPRPEKDYLSFSLIYNHGKRSLDLICKDKVEAEVWIAGLKALISSGQGGRSKIDGWSDGGLYLDDSRDLTSNSPSESSVSASQDISSPDVSVSVPNTSPQSFQPENTLNFERSHAPSNPSNMQVKGSGSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICENVVKVGADKNVSYFSPRADILLPRPLESNVVLDVLQIACGVKHAALVTRQGELFTWGEESGGRLGHGVGKNVVQPRLVEALASTTVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVAVVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENISYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEARLEPTCVPSLIDYNFHRIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPQFDGKLPCLVEDKLAGESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKAPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAAMAPNPGKPYRVCDSCYAKLNKVTESSNNNRRNAMPRLSGENKDRLEKSELRLPKAAVPSNMDLIKQLDSKAAKQGKKADTFSLVRTSQAPSLLQLKDVVLSTAIDLKRTVPRPVLAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVLKLRSQVETLRQRCELQELELQRSAKKTQEAMALAAEESAKSKAAKEVIKSLTAQLKDLAERLPPGVYDAENIRPAYLPNGLEPNGIHYPDFNGERHSRAESISSSSLASIGLESSLINRTEGNLPGSYGTNPYRPNRGPVTTNGTEDYPDDKLPNGSGMIQASSSSVSDIVDGRDSGNLQDDESLRSSRSGVMPANGNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAENWWSENREKVYERYNVRSTDKSSSQAARRADGAGSPVL* | 1120 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops6g02627 | 1119 | Gene3D | - | 458 | 629 | IPR009091 | - | |
| Rops6g02627 | 1119 | Gene3D | - | 12 | 129 | IPR011993 | - | |
| Rops6g02627 | 1119 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 468 | 519 | IPR000408 | - | |
| Rops6g02627 | 1119 | ProSiteProfiles | BRX domain profile. | 1041 | 1096 | IPR013591 | - | |
| Rops6g02627 | 1119 | SUPERFAMILY | RCC1/BLIP-II | 235 | 625 | IPR009091 | - | |
| Rops6g02627 | 1119 | Pfam | Transcription factor BRX N-terminal domain | 875 | 910 | IPR027988 | - | |
| Rops6g02627 | 1119 | FunFam | Putative E3 ubiquitin-protein ligase HERC1 | 630 | 698 | - | - | |
| Rops6g02627 | 1119 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 391 | 401 | IPR000408 | - | |
| Rops6g02627 | 1119 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 628 | 690 | IPR017455 | - | |
| Rops6g02627 | 1119 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 572 | 623 | IPR000408 | - | |
| Rops6g02627 | 1119 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 630 | 702 | IPR013083 | - | |
| Rops6g02627 | 1119 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 443 | 453 | IPR000408 | - | |
| Rops6g02627 | 1119 | PRINTS | Chromosome condensation regulator RCC1 signature | 391 | 407 | IPR000408 | - | |
| Rops6g02627 | 1119 | PRINTS | Chromosome condensation regulator RCC1 signature | 509 | 527 | IPR000408 | - | |
| Rops6g02627 | 1119 | PRINTS | Chromosome condensation regulator RCC1 signature | 281 | 294 | IPR000408 | - | |
| Rops6g02627 | 1119 | PRINTS | Chromosome condensation regulator RCC1 signature | 567 | 588 | IPR000408 | - | |
| Rops6g02627 | 1119 | PRINTS | Chromosome condensation regulator RCC1 signature | 350 | 366 | IPR000408 | - | |
| Rops6g02627 | 1119 | PRINTS | Chromosome condensation regulator RCC1 signature | 407 | 421 | IPR000408 | - | |
| Rops6g02627 | 1119 | PRINTS | Chromosome condensation regulator RCC1 signature | 300 | 316 | IPR000408 | - | |
| Rops6g02627 | 1119 | SUPERFAMILY | PH domain-like | 13 | 123 | - | - | |
| Rops6g02627 | 1119 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 236 | 297 | IPR000408 | - | |
| Rops6g02627 | 1119 | MobiDBLite | consensus disorder prediction | 960 | 982 | - | - | |
| Rops6g02627 | 1119 | Coils | Coil | 824 | 865 | - | - | |
| Rops6g02627 | 1119 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 520 | 571 | IPR000408 | - | |
| Rops6g02627 | 1119 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1040 | 1095 | IPR013591 | - | |
| Rops6g02627 | 1119 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 350 | 404 | IPR000408 | - | |
| Rops6g02627 | 1119 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 284 | 294 | IPR000408 | - | |
| Rops6g02627 | 1119 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 57 | 895 | - | - | |
| Rops6g02627 | 1119 | MobiDBLite | consensus disorder prediction | 783 | 815 | - | - | |
| Rops6g02627 | 1119 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 405 | 456 | IPR000408 | - | |
| Rops6g02627 | 1119 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 298 | 349 | IPR000408 | - | |
| Rops6g02627 | 1119 | CDD | PH_PLC_plant-like | 12 | 124 | - | - | |
| Rops6g02627 | 1119 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 207 | 457 | - | - | |
| Rops6g02627 | 1119 | MobiDBLite | consensus disorder prediction | 696 | 716 | - | - | |
| Rops6g02627 | 1119 | Coils | Coil | 880 | 900 | - | - | |
| Rops6g02627 | 1119 | MobiDBLite | consensus disorder prediction | 1097 | 1119 | - | - | |
| Rops6g02627 | 1119 | Pfam | FYVE zinc finger | 624 | 690 | IPR000306 | GO:0046872 | |
| Rops6g02627 | 1119 | Gene3D | - | 191 | 457 | IPR009091 | - | |
| Rops6g02627 | 1119 | CDD | FYVE_like_SF | 633 | 686 | - | - | |
| Rops6g02627 | 1119 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 405 | 453 | IPR000408 | - | |
| Rops6g02627 | 1119 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 298 | 346 | IPR000408 | - | |
| Rops6g02627 | 1119 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 467 | 514 | IPR000408 | - | |
| Rops6g02627 | 1119 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 573 | 620 | IPR000408 | - | |
| Rops6g02627 | 1119 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 350 | 401 | IPR000408 | - | |
| Rops6g02627 | 1119 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 519 | 568 | IPR000408 | - | |
| Rops6g02627 | 1119 | SMART | fyve_4 | 622 | 691 | IPR000306 | GO:0046872 | |
| Rops6g02627 | 1119 | SUPERFAMILY | FYVE/PHD zinc finger | 624 | 700 | IPR011011 | - | |
| Rops6g02627 | 1119 | MobiDBLite | consensus disorder prediction | 996 | 1012 | - | - | |
| Rops6g02627 | 1119 | MobiDBLite | consensus disorder prediction | 147 | 207 | - | - | |
| Rops6g02627 | 1119 | Pfam | Pleckstrin homology domain | 58 | 123 | IPR001849 | - | |
| Rops6g02627 | 1119 | MobiDBLite | consensus disorder prediction | 960 | 1033 | - | - | |
| Rops6g02627 | 1119 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 458 | 629 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops6g02627 | Rops-Chr6 | 47098182 | 47106255 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops6g02627 | 884 | 1112 | Major Intrinsic Protein MIP | AT1G31880 | 28.821 | 1.37e-16 | 81.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops6g02627 | - | - | gmx:100783270 | 1952.95 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Rops5g00988 | 5 | 19336049 | 19345466 | Rops6g02627 | 6 | 47098182 | 47106255 | PCT |