Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02616 ATGATCAAATTCACTTCCCTTTATCAACAACCTTGCTTGGAATCTCCCATGACCATACAACTAAACAATATCACTTGTACACAATGCAAGTCCAAACAGCCACCGACAACGCACCAAGCCAGAGTAAAGTGTCACTCTCAAACACATATAAATATGGAAAGAATGGAGAAGAACGTGGCAATACCTTTCGATGTTCCACAAGTTCATAGCATCAAACAACTACCTAGGGTGGTCAGCAATGCCAAGCCCTTTAGAGAAGAAGAGAAACAGAGAGAAATTCAAGAGAATAATGAACATTTGAGCCTTGCCATCACCAAGTGTACCGGGGAGACGCAGGCCAAGTTGGCTGAAGTAATTACCGACTTCGTGGGGACCCTAAATAAGAAACAATTTCACTTTTTGGGCTATCCCACTAATCAGAACTTCGACTATGATGCATTGGCACCATTATTGCATTTTCACCTAAACAATGCCGGTGATCCATTTATAGGGAGCAGTTTTGGTCTAAATTCGACAGAATTTGAAGTTTGTGTGCTTGATTGGTTTGCCAAACTATGGGAGATAGAGAAAGGTGAGTATTGGGGTTATGTCACAACCGGTGGAACTGAAGGAAATCTTTATGGGATTTTAACAGGGAGGGAACAATTTCCGGATGGGATTCTGTATACCTCACAAGACACACATTATTCACTATTCAAAATAGCAAGAATGTATAGGATGCAATGTGTGAAGGTTCGCACTTTGGTCTCGGGTGAGATTGATTGTGTTGATCTAAAGGCTTCACTTCTTGCTCACAAGAACAAGCCAGCCATCATCAATCTAAACATAGGAACAACTATGAAAGGAGCAGTTGATGACGTTGATCTCGTAGTACAAACACTTGAGGAAAGTGGCTTCCCTCGTGATAGATTTTATATTCATTGTGATGGAGCTCTATTCGGAATGATGTTGCCGTTTCTAAAACAAGCTCCAAGGATTACTTTCAAGAAGCCCATTGGAAGTATAACCATTTCGGGCCATAAGTTCTTAGGAAGTCCAATTCCTTGTGGGATTGTAATAACTCGTTCAGAACACACCAACATCCTATGTAAAGACGTTGAAGTGATTGCTTCTAAGGATGCCACAATCACGGGTAGCCGAAGTGGGCATGCTCCAATCTTCATATGGTATGCTCTGCAAAAAAGAGGTTTAATTGGACTTAAGAATGAAGTGCATAAATGCATAATGAATGCACGGTACTTACAGGGTCAACTTCGTGAAGCTGGCATTGCTACAATGTTAAATGAGTTTAGCAATACTGTTGTCTTTGAGAGACCTTTAGATGATGACTTTGCCCGTAAGTGGAATTTAGCATGCAATGGAAATATTGCACATGTGGTGGTGATGCAGCACGTTACTGTTGAAATGTTGGACTCCTTTGTTAGTGAATTTATTAAAAAACGAGGGATTTGGTTCCAAGATGGACTGAGGGAGCCTATGTGCCTTGCAGATGAAATTGGCGCTGGAAATTGTGCTTGTATATTGCATAATTGA 1533 0.4097 MIKFTSLYQQPCLESPMTIQLNNITCTQCKSKQPPTTHQARVKCHSQTHINMERMEKNVAIPFDVPQVHSIKQLPRVVSNAKPFREEEKQREIQENNEHLSLAITKCTGETQAKLAEVITDFVGTLNKKQFHFLGYPTNQNFDYDALAPLLHFHLNNAGDPFIGSSFGLNSTEFEVCVLDWFAKLWEIEKGEYWGYVTTGGTEGNLYGILTGREQFPDGILYTSQDTHYSLFKIARMYRMQCVKVRTLVSGEIDCVDLKASLLAHKNKPAIINLNIGTTMKGAVDDVDLVVQTLEESGFPRDRFYIHCDGALFGMMLPFLKQAPRITFKKPIGSITISGHKFLGSPIPCGIVITRSEHTNILCKDVEVIASKDATITGSRSGHAPIFIWYALQKRGLIGLKNEVHKCIMNARYLQGQLREAGIATMLNEFSNTVVFERPLDDDFARKWNLACNGNIAHVVVMQHVTVEMLDSFVSEFIKKRGIWFQDGLREPMCLADEIGAGNCACILHN* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02616 510 Gene3D Aspartate Aminotransferase, domain 1 392 481 IPR015422 GO:0003824
Rops6g02616 510 Gene3D - 151 391 IPR015421 GO:0003824
Rops6g02616 510 Pfam Pyridoxal-dependent decarboxylase conserved domain 170 432 IPR002129 GO:0016830|GO:0019752|GO:0030170
Rops6g02616 510 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 334 355 IPR021115 GO:0016831
Rops6g02616 510 SUPERFAMILY PLP-dependent transferases 118 478 IPR015424 -
Rops6g02616 510 PANTHER - 86 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02616 Rops-Chr6 46952683 46955089 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02616 195 422 Calmodulin-binding Proteins AT2G02000 25.296 2.09e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02616 K25193 - gmx:100784867 705.286